1985年毕业于山东大学生物系。1992年在中国科学院植物研究所获博士学位，并留所工作，先后任研究实习员、助理研究员、副研究员，1997年起任研究员，1999年起任博士生导师。1995、1999、2000、2002和2006年曾分别在美国佛罗里达大学、瑞士苏黎世大学、英国邱园、美国哈佛大学和美国华盛顿史密森研究所进行合作研究。  

近年来一直从事植物系统发育重建和生物地理学研究，即利用多学科的手段，在较高分类阶元上，探讨植物的系统发育关系和进化，并将形态学、古植物学、分子系统学以及生物地理学的研究结果相结合，研究植物类群的起源、分化和现代地理格局及其成因。目前的主要研究工作集中在：  

（1）利用基因、基因组、形态学以及生物地理学等证据探讨被子植物大类群的系统发育和进化；  

（2）利用生命之树，研究植物区系及其生物多样性的时空格局和形成机制。 

曾主持完成过国家自然科学基金委青年基金和美国国家地理学会（NGF）基金项目各1项，国家自然科学基金委面上项目4项，中国科学院知识创新方向性项目1项，还分别与路安民研究员和吴征镒院士共同主持过国家自然科学基金委重点项目各1项，作为合作者完成1项国家自然科学基金委海外青年学者合作研究基金项目。作为课题负责人在研科技部国家重大科学研究计划项目（973）、中国科学院海外科教基地建设计划项目和国家自然科学基金委重大项目各1项。在AJB、IJPS、MBE、MPE、Nature、NP、PNAS、PPEES、Taxon等国际学术刊物（SCI收录期刊）上单独或合作发表论文200余篇。2005年获云南省自然科学一等奖1项（本人排名第二），发表在Nature的研究成果入选2018年度“中国生命科学十大进展”。

主持和参加的科研项目

1.2020.12－2022.12 中国科学院国际伙伴计划项目：全球三大典型山地植物物种演化与共存机制比较研究，专题负责人。(Project title: Comparative study on species evolution and coexistence mechanism of three typical mountain plants in the world)

2.2020.01－2024.12 中国科学院十四五信息化专项：科学大数据工程（二期）－DarwinTree：面向系统发育研究特色数据库，课题负责人。(Project title: The project of science big data) 

3.2019.01－2019.12 环保部中国环科院项目：重点野生维管植物遗传多样性大数据本底调查与评估，专题负责人。(Project title: Investigation and evaluation of genetic diversity of key wild vascular plants)

4.2018.07－2023.06中国科学院战略性先导科技专项(B类XDB31000000)：亚热带森林群落多样性形成与维持机制，项目负责人。(Project title: Formation and maintenance mechanism of subtropical forest community diversity)

5.2018.01－2022.12中国科学院战略性先导科技专项(A类) 地球大数据科学工程：生物多样性与生态安全（XDA19050000），专题负责人。(Project title: Biodiversity and ecological security)    

6.2018.07－2019.12 中国科学院十三五信息化专项：科学大数据工程（一期）－DarwinTree：面向系统发育研究特色数据库，课题负责人。(Project title: The project of science big data)

7.2017.01－2025.01国家重要野生植物种质资源共享服务平台项目：DNA材料库的构建，子课题负责人。(Project title: Building DNA material library)

8.2016.01－2020.01 中国科学院国际研究发展项目(SAJC201613)：热带东非被子植物生命之树重建与适应性进化机制研究，项目负责人。(Project title: The tree of life and adaptive evolution of angiosperms in Tropical East Africa)

9.2016.01－2020.12 国家自然科学基金委重大项目(31590822)：中国-喜马拉雅植物区系分化中心的形成和散布机制，第二课题负责人。(Project title: Formation and dispersal mechanism of diversification centers in China-Himalayan flora)

10. 2015.01－2019.12国家自然科学基金委中美生物多样性Three Dimension国际合作项目(31461123001)：东亚-北美间断分布森林群落生物多样性形成的地史制约、局域适应和种间互作研究，专题负责人。(Project title: The geographical history, local adaptation and interspecific interaction for biodiversity formation in Eastern Asian-North American disjunct forest communities)

11. 2014.01－2018.12 科技部国家重大科学研究计划项目(2014CB954100)：西南山地典型生态系统植物多样性对气候变化的响应，第一课题负责人。(Project title: Response of plant diversity to climate change in typical mountain ecosystems of Southwest China)

12. 2013.09－2016.09 中国科学院国际合作局对外合作重点项目(GJH Z201321)：印度尼西亚热带植物分类调查与生命之树重建，子课题负责人。(Project title: Taxonomic investigation and tree of life reconstruction of tropical plants in Indonesia)

13. 2013.09－2014.05 中国科学院发展中国家访问学者计划(2013FFSA0004)：被子植物蔷薇类(rodids)的系统发育学研究，国内合作者 (国外合作者：科哈特科技大学Rehan Naeem博士，Kohat University of Science and Technology)。(Project title: Phylogeny of rodids)

14. 2013.01－2016.12 中国科学院海外科教基地建设计划：肯尼亚被子植物属的生命之树构建，课题负责人。(Project title: Tree of life for the genera of Kenyan Angiosperm)

15. 2012.01－2016.12 国家高技术研究发展计划(863 计划)资助项目(2012AA021602)：珍稀物种资源样品采集与鉴定研究，子课题负责人。(Project title: Collection and identification of rare species)

16. 2012.01－2016.12 国家自然科学基金委基金面上项目(31270268)：蔷薇类COM分支的系统发育研究，主持人。(Project title: Phylogenetic of the COM branch in rosids)

17. 2011  中国科学院外国专家特聘研究员计划项目（2011T1S24）：分子系统学和进化遗传学，国内合作者 (国外合作者Douglas E. Soltis教授)。(Project title: Molecular systematics and evolutionary genetics)

18. 2010.01－2013.12国家自然科学基金委海峡两岸合作项目(31061160184)：东喜马拉雅-横断山与台湾种子植物区系的联系与进化机制研究，参加者。(Project title: The relationship and evolutionary mechanism of seed plant flora between eastern Himalaya-Hengduan Mountains and Taiwan)

19. 2009.01－2011.12 中国科学院大工程装置依托项目(2009-LSF-GBOWS-01)：中国种子DNA条形码，参加者。(Project title: DNA barcoding of Chinese plant seeds)

20. 2009.01－2012.12 国家自然科学基金委基金重点项目(40830209)：生命之树共生固氮支系重要类群的起源、分化和环境制约，子课题负责人。(Project title: Origin, differentiation and environmental constraints of important groups of symbiotic nitrogen fixing branches of tree of life)

21. 2007.01－2011.12 科技部国家重点基础研究发展计划项目（973计划 2007CB411600）：中国-喜马拉雅地区生物多样性演变和保护研究，子课题负责人。(Project title: Evolution and conservation of biodiversity in Sino-Himalayan region)

22. 2007.01－2010.12 中国科学院知识创新方向性项目(KSCX2-YW-R-136)：动植物若干类群的系统发育和分子进化，主持人。(Project title: Phylogenetic reconstruction and molecular evolution of several plant and animal taxa)

23. 2007.07-2007.09中国科学院-美国密苏里植物园合作项目：中国植物志—葡萄科，爬山虎属的修订，在法国自然历史博物馆，英国邱园和爱丁堡植物园，荷兰莱顿标本馆和俄罗斯圣彼得堡卡马洛夫植物研究所访问研究。(Project title: Flora of China-Vitaceae，revision of Parthenocissus)

24. 2006－2010 美国科学基金会(NSF) COLLABORATIVE RESEARCH项目：解析被子植物主要分支以及12个最棘手的分支，国际合作者。(Project title: Resolving the Trunk of the Angiosperm Tree and Twelve of its Thorniest Branches)

25. 2006.01－2009.12 国家自然科学基金委重点项目(30530090)：基部真双子叶植物中A、B、C和E类MADS-box基因的进化，子课题负责人。 (Project title: Evolution of class A, B, C and E MADS box genes in basal Eudicots)

26. 2004.01－2006.12国家自然科学基金委面上项目(30370094)：桤木属的系统学和分子生物地理学研究，主持人。(Project title: Taxonomy and molecular biogeography of Alnus)

27. 2003.01－2005.12 国家自然科学基金委海外青年学者合作研究基金项目(30228004)：陆地植物的分子系统发育和进化，国内合作者。(Project title: Molecular phylogenetics of cryptogamic land plants – with special emphasis and major genera of East Asia)

28. 2001－2006 美国科学基金会(NSF) Research Coordination Network (RCN)项目：被子植物现生类群和化石类群系统发育树的构建，国际合作者。(Project title: Deep Time: A Comprehensive Phylogenetic Tree of Living and Fossil Angiosperms)

29. 2001.01－2005.12 中国科学院知识创新工程信息化建设专项(INF105-SDB-09)：中国植物数据库和图像库，主持人。(Project title: Chinese plant database and image database)

30. 2000.01－2003.12国家自然科学基金委重点项目(39930020)：东亚植物区系中主要特征成分和重要类群的形成和发展，第二主持人。(Project title: origins and evolution of characteristic elements and important taxa in East Asian flora)

31. 2000.01－2002.12国家自然科学基金委面上项目(39970057)：高等金缕梅类植物的分子系统发育，主持人。(Project title: Molecular phylogenetics of “higher” hamamelids)

32. 1997.01－2000.12 国家自然科学基金委重点项目(39630030)：原始被子植物的结构、分化和演化，第二主持人。(Project title: Structure, diversification and evolution of primitive angiosperms)

33. 1996.01－1998.12 国家自然科学基金委面上项目(39670056)：桦木科植物的分子系统学研究，主持人。(Project title: Molecular systematics of the Betulaceae)

34. 1996.01－2000.12 中国科学院高技术研究与发展重点项目(SDB95-06)：中国植物数据库，主持人。(Project title: Chinese plant database)

35. 1995－1996 美国地理学会项目USA National Geographic Society Grant (No. 5523-95)：三峡库区植物调查和生物多样性研究。(Project title: Botanical inventory and biodiversity along the Three Gorges, Yangtze River, China.)

36. 1993.01－1995.12 国家自然科学基金委青年基金项目(39200009)：桦木科植物的起源和分化，主持人。(Project title: Character evolution and cladistic biogeography of the Betulaceae)

研究论文（注*为通讯作者）

2022

248. Hai Lisi, Li Xiaoqian, Zhang Jingbo, Xiang Xiaoguo, Li Ruiqi, Jabbour Florian, Ortiz Rosa Del C, Lu Anming, Chen Zhiduan*, Wei Wang*. 2022. Assembly dynamics of East Asian subtropical evergreen broadleaved forests: New insights from the dominant Fagaceae trees. Journal of Integrative Plant Biology 64: 2126-2134.

247. Lu Limin, Zhao Lina, Hu Haihua, Liu Bing, Yang Yuchang, You Yichen, Peng Danxiao, Barrettd Russell L., Chen Zhiduan*. 2022. A comprehensive evaluation of flowering plant diversity and conservation priority for national park planning in China. Fundamental Research 10.1016/j.fmre.2022.08.008

246. Shan Zhangjian, Zhang Qian, Peng Danxiao, Ye Jianfei*, Cao Lan, Chen Zhiduan, Qin Haining. 2022. Assessing conservation priorities of threatened medicinal plants in China: A new comprehensive phylogenetic scoring system. Journal of Systematics and Evolution 10.1111/jse.12903

245. Wang Qinghua, Zhang Jian, Liu Yang, Jia Yu, Jiao Yuannian, Xu Bo, Chen Zhiduan*. 2022. Diversity, phylogeny, and adaptation of bryophytes: insights from genomic and transcriptomic data. Journal of Experimental Botany 73: 4306-4322.

244. Zaman Wajid, Ye Jianfei, Ahmad Mushtaq, Saqib Saddam, Shinwari Zabta Khan, Chen Zhiduan*. 2022. Phylogenetic exploration of traditional Chinese medicinal plants: A case study on Lamiaceae. Pakistan Journal of Botany 54: 1033.

243. Yu Jinren¹, Niu Yanting¹, You Yichen, Cox Cymon J., Barrett Russell L., Trias-Blasi Anna, Guo Jing, Wen Jun, Lu Limin*, Chen Zhiduan*. 2022. Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan–Hengduan Mountains. New Phytologist 10.1111/nph.18580  

242. Zhang Qiang¹, Ye Jianfei¹, Le Chi-Toan, Njenga Dennis Mwithukia, Rabarijaona Narindra Romer, Omollo Wyckliffe Omondi, Lu Limin, Liu Bing*, Chen Zhiduan. 2022. New insights into the formation of biodiversity hotspots of the Kenyan flora. Diversity and Distributions 28: 2696-2711.

241. Zhang Xiaoxia, Ye Jianfei, Laffan Shawn W., Mishler Brent D., Thornhill Andrew H., Lu Limin, Mao Lingfeng, Liu Bing, Chen Youhua, Lu Anming, Miller Joseph T.*, Chen Zhiduan*. 2022. Spatial phylogenetics of the Chinese angiosperm flora provides insights into endemism and conservation. Journal of Integrative Plant Biology 64: 105-117.

240. 陈之端, 张晓霞, 胡海花, 牛艳婷, 叶建飞, 张虔, 刘赟, 赵莉娜, 卢杉, 鲁丽敏, 路安民. 2022. 中国植物地理学研究进展与展望. 地理学报 77: 120-132.

239. 赵莉娜, 鲁丽敏, 单章建, 叶建飞, 刘冰, 赖阳均, 陈之端, 路安民. 2022. 基于植物大数据的自然保护地识别和资源利用规划. 植物资源与环境学报 31: 1-10.

238. 赵莉娜, 单章建, 刘冰, 鲁丽敏, 陈之端, 路安民. 2022. 基于植物大数据遴选中国地理标志资源植物. 植物资源与环境学报 31: 11-19.

2021

237. Fu Xinxing, Zhang Jian*, Zhang Guoqiang, Liu Zhongjian, Chen Zhiduan. 2021. Insights into the origin and evolution of plant sigma factors. Journal of Systematics and Evolution 12537.

236. Hu Haihua, Ye Jianfei, Liu Bing, Mao Lingfeng, Smith Stephen A., Barrett Russell L., Soltis Pamela S., Soltis Douglas E., Chen Zhiduan, Lu Limin*. 2021. Temporal and spatial comparisons of angiosperm diversity between eastern Asia and North America. National Science Review b199.

235. Lian Lian, Shen Jianyong, Ortiz Rosa Del C., Yu Shengxiang, Chen Zhiduan, Wang Wei*. 2021. Phylogenetic analyses and modelling distributions guide conservation of a critically endangered liana species, Eleutharrhena macrocarpa (Menispermaceae). Taxon 70: 931-945.

234. Liu Yun, Ye Jianfei, Hu Haihua, Peng Danxiao, Zhao Lina, Lu Limin, Zaman Wajid, Chen Zhiduan*. 2021. Influence of elevation on bioregionalisation: A case study of the Sino-Himalayan flora. Journal of Biogeography 48: 2578-2587.

233. Parmar Gaurav, Dang Viet-Cuong, Rabarijaona Romer Narindra, Chen Zhiduan, Jackes Betsy R., Barrett Russell L., Zhang Zhuzhi, Niu Yanting, Trias-Blasi Anna, Wen Jun, Lu Limin*. 2021. Phylogeny, character evolution and taxonomic revision of Causonis, a segregate genus from Cayratia (Vitaceae). Taxon 70: 1188-1218.

232. Peng Danxiao, Dang Viet-Cuong, Habib Sadaf, Barrett Russell L., Trias-Blasi Anna, Wen Jun, Chen Zhiduan, Lu Limin*. 2021. Historical biogeography of Tetrastigma (Vitaceae): Insights into floristic exchange patterns between Asia and Australia. Cladistics 37: 803-815.

231. Rabarijaona Romer Narindra, Rafaralahy Valisoa Louisicael, Rakotovao Charles, Ranaivoson Rindra Manasoa, Liu Bing, Chen Zhiduan, Wen Jun, Lu Limin*. 2021. Cyphostemma calcarium, a new species of Vitaceae from the Ankarana Special Reserve, Madagascar. Phytokeys 180: 73-80.

230. Shan Zhangjian, Ye Jianfei*, Hao Dacheng, Xiao Peigen, Chen Zhiduan, Lu Anming. 2021. Distribution patterns and industry planning of commonly used traditional Chinese medicinal plants in China. Plant Diversity 44: 255-261.

229. Zaman Wajid, Ye Jianfei*, Saqib Saddam, Liu Yun, Shan Zhangjian, Hao Dacheng, Chen Zhiduan, Xiao Peigen. 2021. Predicting potential medicinal plants with phylogenetic topology: Inspiration from the research of traditional Chinese medicine. Journal of Ethnopharmacology 281.

228. 顾红雅, 左建儒, 漆小泉, 杨淑华, 陈之端, 钱前, 林荣呈, 王雷, 萧浪涛, 王小菁, 陈凡, 姜里文, 白永飞, 种康*, 王台*. 2021. 2020年中国植物科学若干领域重要研究进展. 植物学报 56: 119-133.

227. 杨宇昌, 马欣堂, 郑海磊, 张谢勇, 杨福生, 陈之端. 2021. 石蒜科黑脉葱之模式产地考证及补充资料. 西北植物学报 41: 894-898.

2020

226. Chen Xiaohong, Xiang Kunli, Lian Lian, Peng Huanwen, Erst AS, Xiang Xiaoguo, Chen Zhiduan, Wang Wei*. 2020. Biogeographic diversification of Mahonia (Berberidaceae): Implications for the origin and evolution of East Asian subtropical evergreen broadleaved forests. Molecular Phylogenetics and Evolution 151.

225. Hu Haihua, Liu Bing, Liang Yishuo, Ye Jianfei, Saddam Saqib, Meng Zhen, Lu Limin*, Chen Zhiduan*. 2020. An updated Chinese vascular plant tree of life: Phylogenetic diversity hotspots revisited. Journal of Systematics and Evolution 58: 663-672.

224. Lian Lian, Ortiz Rosa del C., Jabbour Florian, Zhang Caifei, Xiang Xiaoguo, Andrey Erst, Gao Tiangang, Chen Zhiduan, Wang Wei*. 2020. Phylogeny and biogeography of Pachygoneae (Menispermaceae), with consideration of the boreotropical flora hypothesis and resurrection of the genera Cebatha and Nephroia. Molecular Phylogenetics and Evolution 148: 106825.

223. Lu Limin, Hu Haihua, Peng Danxiao, Liu Bing, Ye Jianfei, Yang Tuo, Li Honglei, Sun miao, Smith Stephen A., Soltis Pamela S, Soltis Douglas E, Chen Zhiduan*. 2020. Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019). Journal of Biogeography 47: 2286-2291.

222. Rabarijaona Romer Narindra, Dang Viet-Cuong, Parmar Gaurav, Liu Bing, Wen Jun, Chen Zhiduan, Lu Limin*. 2020. Phylogeny and taxonomy of Afrocayratia, a new genus of Vitaceae from continental Africa and Madagascar. Journal of Systematics and Evolution 58: 1090-1107. 

221. Su Junxia, Dong Congcong, Niu Yanting, Lu Limin, Xu Chao, Liu Bing, Zhou Shiliang, Lu Anming, Zhu Yuping, Wen Jun*, Chen Zhiduan*. 2020. Molecular phylogeny and species delimitation of Stachyuraceae: advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries. Journal of Systematics and Evolution 58: 710-724. 

220. Sun Miao*, Folk Ryan A*, Gitzendanner Matthew A, Soltis Pamela S, Chen Zhiduan, Soltis Douglas E, Guralnick Robert P*. 2020. Recent accelerated diversification in rosids occurred outside the tropics. Nature Communications 11: 3333.

219. Sun Miao*, Folk Ryan A*, Gitzendanner Matthew A, Soltis Pamela S, Chen Zhiduan, Soltis Douglas S, Guralnick Robert P*. 2020. Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids. American Journal of Botany 107(6): 895-909.

218. Wang Jinxiu, Xiang Qiuyun (Jenny), Chen Zhiduan, Qin Haining, Lu Anmin. 2020. In memory of 

Professor Yan-Cheng Tang—A brief biography and academic contributions. Harvard Papers in Botany 25 (2): 245–251.

217. Wang Wei*, Xiang Xiaoguo, Xiang Kunli, Ortiz Rosa del C., Jabbour Florian, Chen Zhiduan. 2020. A dated phylogeny of Lardizabalaceae reveals an unusual long-distance dispersal across the Pacific Ocean and the rapid rise of East Asian subtropical evergreen broadleaved forests in the late Miocene. Cladistics 36: 447-457.

216. Xiang Qiuyun (Jenny) *, Chen Zhiduan, Song Baohao, David E. Boufford. 2020. In memory of Professor Tang Yan-Cheng: New perspectives in systematic and evolutionary biology. Journal of Systematics and Evolution 58: 527-532.

215. Ye Jianfei, Niu Yanting, Feng Yanlei, Liu Bing, Hai Lisi, Wen Jun, Chen Zhiduan*. 2020.   Taxonomy and biogeography of Diapensia (Diapensiaceae) based on chloroplast genome data. Journal of Systematics and Evolution 58: 696-709.

214. Ye Jianfei, Liu Yun, Chen Zhiduan*. 2020. Dramatic impact of metric choice on biogeographical regionalization. Plant Diversity 42: 67-73.

213. Zhang Jian, Fu Xinxing, Li Ruiqing, Zhao Xiang, Liu Yang, Li Minghe, Zwaenepoel Arthur, Ma Hong, Goffinet Bernard, Guan Yanlong, Xue Jianyu, Liao Yiying, Wang Qinfeng, Wang Qinghua, Wang Jieyu, Zhang Guoqiang, Wang Zhiwen, Jia Yu, Wang Meizhi, Dong Shanshan, Yang Jianfen, Jiao Yuannian, Guo Yalong, Kong Hongzhi, Lu Anming, Yang Huanming, Zhang Shouzhou*, Van de Peer Yves*, Liu Zhongjan*, Chen Zhiduan*. 2020. The hornwort genome and early land plant evolution. Nature Plants 6: 107-118.

212. 陈之端, 路安民, 刘冰, 叶建飞. 2020. 中国维管植物生命之树. 科学出版社, 北京.

211. 左建儒, 漆小泉, 林荣呈, 钱前, 顾红雅, 陈凡, 杨淑华, 陈之端, 白永飞, 王雷, 王小菁, 姜里文, 萧浪涛, 种康, 王台. 2020. 2019年中国植物科学若干领域重要研究进展. 植物学报. 55(3):257-269.doi:10.11983/CBB20108

2019

210. Dong Yibo¹, Chen Shichao¹, Cheng Shifeng, Zhou Wenbin, Ma Qing, Chen Zhiduan, Fu Chengxin, Liu Xin*, Zhao Yunpeng*, Soltis Pamela S*, Wong Gane KS*, Soltis Douglas E*, Jenny Xiang*. 2019. Natural selection and repeated patterns of molecular evolution following allopatric divergence. eLife 8: e45199.

209. Huang Youjun, Xiao Lihong*, Zhang Zhongren, Zhang Rui, Wang Zhengjia, Huang Chunying, Huang Ren, Luan Yumeng, Fan Tongqiang, Wang Jianhua, Shen Chen, Zhang Shenmei, Wang Xinwang, Jennifer Randall, Zheng Bingsong, Wu Jiasheng, Zhang Qixiang, Xia Guohua, Xu Chuanmei, Chen Ming, Zhang Liangsheng, Jiang Wenkai, Gao Lizhi, Chen Zhiduan, Leslie Charles A, Grauke LJ, Huang Jianqin*. 2019. The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition. GigaScience 8(5): 1-17.

208. Lian Lian, Rosa Del C. Ortiz, Florian Jabbour, Chen Zhiduan, Wang Wei *. 2019. Re-delimitation of Tinospora (Menispermaceae): Implications forcharacter evolution and historical biogeography. Taxon 68: 905–917.

207. Liu Bing, Tan Yunhong, Liu Su, Olmstead Richard G, Zhang Mindao, Chen Zhiduan, Joshee Nirmal, Vaidya Brajesh N, Chung Richard CK, Li Bo*. 2019. Phylogenetic relationships of Cyrtandromoea and Wightia revisited: A new tribe in Phrymaceae and a new family in Lamiales. Journal of Systematics and Evolution 58(1): 1-17.

206. Niu Yanting¹, Barrett Russell L*, Zhang Zhuzhi, Lu Limin*, Chen Zhiduan. 2019. Taxonomic revision of Triplostegia (Caprifoliaceae: Dipsacales). Phytotaxa 392 (1): 019-032.

205. Ye Jianfei, Lu Limin, Liu Bing, Yang Tuo, Zhang Jinlong, Hu Haihua, Li Rong, Lu Anming, Liu Huiyuan, Mao Lingfeng*, Chen Zhiduan*. 2019. Phylogenetic delineation of regional biota: A case study of the Chinese flora. Molecular Phylogenetics and Evolution 135: 222-229.

204. 钱前, 漆小泉, 林荣呈, 杨淑华, 董爱武, 左建儒, 陈凡, 萧浪涛, 顾红雅, 陈之端, 白永飞, 王小菁, 王雷, 姜里文, 种康*, 王台*. 2019. 2018年中国植物科学若干领域重要研究进展. 植物学报 54(4): 405-440.

203. 鲁丽敏, 胡海花, 彭丹晓, 陈之端*. 2019. 博物馆与摇篮——记中国被子植物区系进化历史研究. 前沿科学 13(1): 77-79.

202. 鲁丽敏, 胡海花, 彭丹晓, 陈之端*. 2019. 中国被子植物区系进化历史研究. 73-91. 中国科协生命科学学会联合体（编），2018年中国生命科学十大进展. 北京：中国科学技术出版社.

201. 鲁丽敏, 陈之端*, 路安民. 2019. 系统生物学家最终能得到完全一致的生命之树吗？757-761. 科学通报 高福（主编）, Science 125个前沿问题解读（下册）. 北京：科学出版社.

200. 李德铢, 陈之端, 王红, 路安民. 2019. 中国维管植物科属志（1-5卷）. 科学出版社, 北京.

2018

199. Dong Shanshan, Xue Jiayu, Zhang Shouzhou, Zhang Li, Wu Hong, Chen Zhiduan, Bernard Goffinet , Liu Yang*. 2018. Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of the mitogenomes in hornworts. The Bryologist 121(1): 014-022.

198. Habib Sadaf, Dang Viet C, Ickert-Bond Stefanie M, Wen Jun, Chen Zhiduan, Lu Limin*. 2018. Evolutionary trends in Tetrastigma (Vitaceae): Morphological diversity and taxonomic implications. Journal of Systematics and Evolution 56(4): 360-373.

197. Le Chi Toan¹, Liu Bing¹, Barrett Russell L, Lu Limin*, Wen J, Chen Zhiduan. 2018. Phylogeny and a new tribal classification of Opiliaceae (Santalales) based on molecular and morphological evidence. Journal of Systematics and Evolution 56: 56-66.

196. Lin Qinwen¹, Le Chi Toan¹, Njenga Dennis M¹, Hao Yunqing¹, Liu Bing*, Yu Wentao, Chen Zhiduan. 2018. Bothriospermum longistylum sp. nov. (Boraginaceae) from north China. Nordic Journal of Botany 36(4): 1-8.

195. Liu Bing¹, Le Chi Toan¹, Barrett Russell L, Nickrent Daniel L, Chen Zhiduan, Lu Limin*, Romina Vidal-Russell*. 2018. Historical biogeography of Loranthaceae (Santalales): Diversification agrees with emergence of tropical forests and radiation of songbirds. Molecular Phylogenetics and Evolution 124: 199-212.

194. Lu Limin, Cox Cymon J, Mathews S, Wang Wei, Wen Jun*, Chen Zhiduan*. 2018. Optimal data partitioning, multispecies coalescent, and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae). Cladistics 34: 57-77.

193. Lu Limin¹, Mao Lingfeng¹, Yang Tuo¹, Ye Jianfei¹, Liu Bing¹, Li Honglei¹, Sun Miao¹, Miller Joseph T, Mathews Sarah, Hu Haihua, Niu Yanting, Peng Danxiao, Chen Youhua, Smith Stephen A, Chen Min, Xiang Kunli, Le Chi Toan, Dang Viet Cuong, Lu Anming, Soltis Pamela S*, Soltis Douglas E*, Li Jianhua *, Zhiduan Chen*. 2018. Evolutionary History of the Angiosperm Flora of China. Nature 554: 234-238.

192. Niu Yanting, Jabbour Florian, Barrett Russell L., Ye Jianfei, Zhang Zhizhu, Lu Kaiqing, Lu Limin*, Chen Zhiduan. 2018. Combining complete chloroplast genome sequences with target loci data and morphology to resolve species limits in Triplostegia (Caprifoliaceae). Molecular Phylogenetics and Evolution 129: 15-26.

191. Niu Yanting, Ye Jianfei, Zhang Jinlong, Wan Jizhong, Yang Tuo, Wei Xiaoxin, Lu Limin^*, Li Jianhua, Chen Zhiduan. 2018. Long-distance dispersal or post-glacial contraction? Insights into disjunction between Himalaya-Hengduan Mountain and Taiwan in a cold-adapted herbaceous genus, Triplostegia. Ecology and Evolution 8: 1131-1146.

190. Wen Jun*. Lu Limin, Nie Zelong, Liu Xiuqun, Zhang Ning, Ickert-Bond Stefanie, Jean Gerrath, Manchester Steven R, John Boggan, Chen Zhiduan. 2018. A new phylogenetic tribal classification of the grape family (Vitaceae). Journal of Systematics and Evolution 56 (4): 262-272.

189. Wen Jun*, Lu Limin*, Hsu Tsai-Wen, Dang Viet-Cuong, Habib Sadaf, Boggan John K, Okada Hiroshi, Chen I-Ju, Chen Zhiduan. 2018. Pseudocayratia, a new genus of Vitaceae from China and Japan with two new species and three new combinations. Journal of Systematics and Evolution 56(4): 374-393.

188. Wu Shengdan, Zhang Linjiang*, Lin Li, Yu Shengxiang, Chen Zhiduan, Wang Wei*. 2018. Insights into the historical assembly of global dryland floras: the diversification of Zygophyllaceae. BMC Evolutionary Biology 18: 166.

187. Yang Teng, Tedersoo Leho, Soltis Pamela S, Soltis Douglas E, Gilbert Jack A, Sun Miao, Shi Yu, Wang Hongfei, Li Yuntao, Zhang Jian, Chen Zhiduan, Lin Hanyang, Zhao Yunpeng, Fu Chengxin, Chu Haiyan*. 2018. Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China. The ISME Journal 13: 686-697.

186. Yang Tuo, Lu Limin, Wang Wei, Li Jianhua, Manchester Steven R, Wen Jun, Chen Zhiduan^*. 2018. Boreotropical range expansion and long-distance dispersal explain two amphi-Pacific tropical disjunctions in Sabiaceae. Molecular Phylogenetics and Evolution 124: 181-191.

185. Zhu Junyi^*, Zhang Lifan, Ren Baoqing, Chen Min, Li Ruiqi, Zhou You, Liang Yu, Li Jianhua^*, Chen Zhiduan^*. 2018. Comparative flower and inflorescence organogenesis among genera of Betulaceae: Implications for phylogenetic relationships. Botanical Review 84: 79-98.

184. 陈凡, 钱前, 王台, 董爱武, 漆小泉, 左建儒, 杨淑华, 林荣呈, 萧浪涛, 顾红雅, 陈之端, 姜里文, 白永飞, 孔宏智, 种康. 2018. 2017年中国植物科学若干领域重要研究进展. 植物学报 53(4): 391-440.

183. 陈之端*，李德铢. 2018. 系统发育多样性和生物多样性保护. 科学 70: 22-25.

182. 李德铢, 陈之端, 王红, 路安民. 2018. 中国维管植物科属词典. 科学出版社, 北京.

2017

181. 彭丹晓，鲁丽敏*，陈之端. 2017. 区域生命之树及其在植物区系研究中的应用. 生物多样性 25(2): 156-162.

180. 王伟，张晓霞，陈之端，路安民*. 2017. 被子植物APG分类系统评论. 生物多样性 25(4): 1-10.

179. Habib Sadaf¹, Dang Viet C¹, Ickert-Bond Stefanie M, Zhang Jinlong, Lu Limin *, Wen Jun, Chen Zhiduan. 2017. Robust phylogeny of Tetrastigma (Vitaceae) based on ten plastid DNA regions: Implications for infrageneric classification and seed character evolution. Frontiers in Plant Science 8: 590.

178. Wang Wei*, Ortiz Rosa del C, Jacques Frédéric M B, Chung Shihwen, Liu Yang, Xiang Xiaoguo, Chen Zhiduan. 2017. New insights into the phylogeny of Burasaieae (Menispermaceae) with the recognition of a new genus and emphasis on the southern Taiwanese and mainland Chinese disjunction. Molecular Phylogenetics and Evolution 109: 11-20.

177. Dang Viet C, Nguyen Van H, Dao Baohui,Yang Wanliu, Li Faliang, Yang Xinkai, Wen Jun, Chen Zhiduan, Lu Limin*. 2017. A New Species and New Records of Cyphostemma (Vitaceae) from China and Vietnam based on Morphological and Molecular Evidence. Systematic Botany 42: 449-457.

2016

176. Chen Zhiduan, Lu Anming, Zhang Shouzhou, Wang Qingfeng, Liu Zhongjian, Li Dezhu*, Ma Hong, Li Jianhua, Soltis Douglas E, Soltis Pamela S, Wen Jun, China Phylogeny Consortium. 2016. The tree of life: China project. Journal of Systematics and Evolution 54(4): 273-276.

175. Chen Zhiduan, Yang Tuo, Lin Li, Lu Limin, Li Honglei, Sun Miao, Liu Bing, Chen Min, Niu Yanting, Ye Jianfei, Cao Zhiyong, Liu Hongmei, Wang Xiaoming, Wang Wei, Zhang Jingbo, Meng Zhen, Cao Wei, Li Jianhui, Wu Shengdan, Zhao Huiling, Liu Zhongjian, Du Zhiyuan, Wang Qingfeng, Guo Jing, Tan Xinxin, Su Junxia, Zhang Linjing, Yang Leilei, Liao Yiying, Li Minghe, Zhang Guoqiang, Chung Shihwen, Zhang Jian, Xiang Kunli, Li Ruiqi, Soltis Douglas E, Soltis Pamela S, Zhou Shiliang, Ran Jinhua, Wang Xiaoquan, Jin Xiaohua, Chen Yousheng, Gao Tiangang, Li Jianhua, Zhang Shouzhou*, Lu Anming*, China Phylogeny Consortium. 2016. Tree of life for the genera of Chinese vascular plants. Journal of Systematics and Evolution 54(4): 277-306.

174. Li Honglei, Wang Wei, Li Ruiqi, Zhang JingBo, Sun Miao, Naeem Rehan, Su Junxia, Xiang Xiaoguo, Mortimer Peter E, Li Dezhu, Hyde Kevin D, Xu Jianchu, Soltis Douglas E, Soltis Pamela S, Li Jianhua, Zhang Shouzhou, Wu Hong, Chen Zhiduan*, Lu Anming*. 2016. Global versus Chinese perspectives on the phylogeny of the N-fixing clade. Journal of Systematics and Evolution 54(4): 392-399.

173. Sun Miao, Naeem Rehan, Su Junxia, Cao Zhiyong, Burleigh J Gordon, Soltis Pamela S, Soltis Douglas E*, Chen Zhiduan*. 2016. Phylogeny of the Rosidae: A dense taxon sampling analysis. Journal of Systematics and Evolution 54(4): 363-391.

172. Ortiz Rosa del C¹*, Wang Wei¹*, Jacques Frédéric M B¹, Chen Zhiduan. 2016. Phylogeny and a revised tribal classification of Menispermaceae based on molecular and morphological data. Taxon 65: 1288-1312.

171. Wang Wei, Dilcher David L*, Sun Ge, Wang Hongshan, Chen Zhiduan. 2016. Accelerated evolution of early angiosperms: Evidence from ranunculalean phylogeny by integrating living and fossil data. Journal of Systematics and Evolution 54(4): 336-341.

170. Yang Leilei, Li Honglei, Wei Lei, Yang Tuo, Kuang Daiyong, Li Minghong, Liao Yiying, Chen Zhiduan*, Wu Hong*, Zhang Shouzhou*. 2016. A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales. Journal of Systematics and Evolution 54(4): 400-415.

169. Lin Ruozhu, Li Ruiqi, Lu Anming, Zhu Junyi, Chen Zhiduan*. 2016. Comparative flower development of Juglans regia, Cyclocarya paliurus and Engelhardia spicata: homology of floral envelopes in Juglandaceae. Botanical Journal of the Linnean Society 181: 279-293.

168. Lu Limin, Wen Jun*, Chen Zhiduan*. 2016. Cayratia cheniana (Vitaceae): An Endangered New Species Endemic to the Limestone Mountains of Ninh Thuan Province, Vietnam. Systematic Botany 41(1): 49-55.

167. Wang Wei*, Lin Li, Xiang Xiaoguo, Ortiz RC, Liu Yang, Xiang Kunli, Wu Shengdan, Xing Yaowu, Chen Zhiduan*. 2016. The rise of angiosperm-dominated herbaceous floras: Insights from Ranunculaceae. Science Reports 6: 27259.

166. Dang Viet Cuong, Lu Limin*, Nguyen Van Hieu, Habib Sadaf, Barrett Russell L, Chen Zhiduan. 2016. A new record of the genus Yua (Vitaceae) from Vietnam. Phytotaxa 255(3): 274-280.

165. Xiang Kunli, Wu Shengdan,Yu Shengxiang, Liu Yang, Florian Jabbour, Andrey S. Erst, Zhao Liang, Wang Wei*, Chen Zhiduan. 2016. The first comprehensive phylogeny of Coptis (Ranunculaceae) and its implications for character evolution and classification. PLoS ONE 11(4): e0153127.

164. 鲁丽敏, 陈之端*, 路安民. 2016. 系统生物学家最终能得到完全一致的生命之树吗？科学通报 61(9): 958-963.

2015

163. Sun Miao, Soltis Douglas E *, Soltis Pamela S, Zhu Xinyu, J. Gordon Burleigh, Chen Zhiduan*. 2015. Deep phylogenetic incongruence in the angiosperm clade Rosidae. Molecular Phylogenetics and Evolution 83: 156-166.

162. Zhang Jian¹, Chen Min¹, Dong Xiaoyu, Lin Ruozhu, Fan Jianhua, Chen Zhiduan*. 2015. Evaluation of four commonly used dna barcoding loci for Chinese medicinal plants of the family Schisandraceae. PLoS ONE 10(5): e0125574.

161. Li Honglei¹, Wang Wei¹, Peter E. Mortimer, Li Ruiqi, Li Dezhu, Kevin D, Hyde, Xu Jianchu, Soltis Douglas E, Chen Zhiduan*. 2015. Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change. Science Reports 5: 14023.

160. Lin Li, Tang Liang, Bai Yunjun, Tang Zhiyao, Wang Wei^*, Chen Zhiduan. 2015. Range expansion and habitat shift triggered elevated diversification of the rice genus (Oryza, Poaceae) during the Pleistocene. BMC Evolutionary Biology 15: 182.

159. Zhu Xiangyun, Chen Zhiduan, Liu Bo. 2015. Species Catalogue of China. Vol. 1, Plants, Spermatophytes (IV): Angiosperms (Paeoniaceae- Polygalaceae). Beijing: Science Press. [朱相云，陈之端，刘博. 2015. 中国生物物种名录. 第一卷，植物, 种子植物（IV）: 被子植物（芍药科-远志科）. 北京: 科学出版社.

158. 种康, 王台, 钱前, 王小菁, 左建儒, 顾红雅, 姜里文, 陈之端, 白永飞, 杨淑华, 孔宏智, 陈凡，萧浪涛.2015. 2014年中国植物科学若干领域重要研究进展. 植物学报 50(4): 412-4.

157. 赵慧玲, 鲁丽敏, 苏俊霞*, 陈之端. 2015. 基于形态和分子证据对斑果藤族和节蒴木科的系统学研究. 植物学报 50(4): 473-481.

156. Meng Zhen, Dong Hui, Li Jianhui, Chen Zhiduan, Zhou Yuanchun, Wang Xuezhi, Zhang Shouzhou. 2015. Darwintree: A Molecular Data Analysis and Application Environment for Phylogenetic Study. Data Science Journal, 14: 10, pp. 1-10.

2014

155. 鲁丽敏，孙苗，张景博，李洪雷，林立，杨拓，陈闽，陈之端*. 2014. 生命之树及其应用. 生物多样性 22(2): 3-20.

154. Xiang Xiaoguo, Wang Wei, Li Ruiqi, Liu Yang, Zhou Zhequn, Li Zhenyu, Chen Zhiduan*. 2014. Large-scale phylogenetic analyses reveal fagalean diversification promoted by the interplay of diaspores and environments in the Paleogene. Perspectives in Plant Ecology, Evolution and Systematics 16: 101-110.

153. Wang Wei*, Li Honglei, Chen Zhiduan. 2014. Analysis of plastid and nuclear DNA data in plant phylogenetics-evaluation and improvement. Science China, Life Sciences 57(3): 280-286.

152. Wang Wei*, Li Honglei, Xiang Xiaoguo, Chen Zhiduan. 2014. Revisiting the phylogeny of Ranunculeae: Implications for divergence time estimation and historical biogeography, Journal of Systematics and Evolution 52(5): 551-565.

151. Su Kunmei, Li Zhenhuan, Chen Zhiduan* 2014. CsPl from the perianthless early-diverging Chloranthus spicatus shows function on petal development in Arabidopsis thaliana. Botanical Studies 55: 21.

150. 朱俊义, 张力凡, 沈鹏, 任保青, 梁宇, 陈之端*. 2014. 榛属（桦木科）花序和花的形态发生. 植物分类与资源学报 36(4): 433-442.

149. 朱俊义, 张力凡, 沈鹏, 任保青, 梁宇, 陈之端*. 2014. 桦木科植物花柱适应风媒传粉的特征. 植物学报 49(5): 524-538.

148. 朱俊义, 张力凡, 沈鹏, 任保青, 梁宇, 陈之端*. 2014. 千金榆花序及花器官发育. 植物研究 34(2): 170-176.

147. Li Jianhua*, Jiang Jinhuo, Holly Vander Stel, Austin Homkes, Jeffrey Corajod, Kenneth Brown, Chen Zhiduan. 2014. Phylogenetics and biogeography of Apios (Fabaceae) inferred from sequences of nuclear and plastid genes. International Journal of Plant Sciences 175(7): 764-780.

146. Zeng Jie*, Ren Baoqing, Zhu Junyi, Chen Zhiduan. 2014. Betula hainanensis (Betulaster, Betulaceae), a new species from Hainan Island, China. Annales Botanici Fennici 51: 399-402.

2013

145. Lu Limin, Wang Wei, Chen Zhiduan*, Wen Jun*, 2013. Phylogeny of the non-monophyletic Cayratia Juss. (Vitaceae) and implications for character evolution and biogeography. Molecular Phylogenetics and Evolution 68: 502-515.

144. Zhang Jingbo, Li Ruiqi, Xiang Xiaoguo, Manchester Steven R, Lin Li, Wang Wei, Wen Jun*, Chen Zhiduan*. 2013. Integrated fossil and molecular data reveal the biogeographic diversification of the Eastern Asian-Eastern North American disjunct hickory genus (Carya Nutt.). PLoS ONE 8(7): e70449.

143. Li Honglei, Wang Wei*, Lin Li, Zhu Xiangyun, Li Jianhua, Zhu Xinyu, Chen Zhiduan. 2013. Diversification of the phaseoloid legumes: Effects of climate change, range expansion and habit shift. Frontiers in Plant Science 4: 386.

142. Wang Wei*, Liu Yang, Yu Shengxiang, Gao Tiangang, Chen Zhiduan. 2013. Gymnaconitum, a new genus of Ranunculaceae endemic to the Qinghai-Tibetan Plateau. Taxon 62: 713-722.

141. Chen Zhiduan, Li Dezhu*. 2013. On Barcode of Life and Tree of Life. Plant Diversity and Resources 35(6): 675-681. [陈之端, 李德铢*. 2013. 生命条形码与生命之树. 植物分类与资源学报 35(6): 675-681.]

2012

140. Wang Wei¹, Ortiz Rosa Del C. ¹, Jacques Frédéric M.B.¹, Xiang Xiaoguo, Li Honglei, Lin Li, Li Ruiqi, Liu Yang, Soltis Pamela S, Soltis Douglas E., Chen Zhiduan*. 2012. Menispermaceae and the diversification of tropical rainforests near the Cretaceous-Paleogene boundary. New Phytologist 195: 470-478.

139. Hu Jin¹, Zhang Jian¹, Shan Hongyan, Chen Zhiduan*. 2012. Expression of floral MADS-box genes in Sinofranchetia chinensis (Lardizabalaceae): implications for the nature of the nectar leaves. Annals of Botany 110: 57-69.

138. Su Junxia¹, Wang Wei¹, Zhang Libing, Chen Zhiduan*. 2012. Phylogenetic placements of two enigmatic genera, Borthwickia and Stixis, based on molecular and pollen data and the description of a new family of Brassicales, Borthwickiaceae. Taxon 61(3): 601-611.

137. Dong Xiaoyu, Liu Zhong, Richard M. K. Sauders, Chen Zhiduan*. 2012. Floral ontogeny of Schisandra chinensis (Schisandraceae): implications for androecial evolution within Schisandra and Kadsura. Plant Systematics and Evolution 298(4): 713-722

136. Lu Limin, Wen Jun*, Chen Zhiduan*. 2012. A combined morphological and molecular phylogenetic analysis of Parthenocissus (Vitaceae) and taxonomic implications. Botanical Journal of the Linnean Society 168: 43-63.

135. Song Jingyuan¹, Shi Linchun¹, Li Dezhu, Song Yongzhen, Niu Yunyun, Chen Zhiduan. 2012. Luo Hongmei, Pang Xiaohui, Sun Zhiying, Liu Chang, Lü Aiping, Deng Youping, Zachary Larson-Rabin, Mike Wilkinson, Chen Shilin*. 2012. Extensive pyrosequencing reveals frequent intra-genomic variations of Internal Transcribed Spacer regions of nuclear ribosomal DNA. PloS One 7(8): e43971.

134. 陈之端*, 应俊生, 路安民. 2012. 中国西南地区与台湾种子植物间断分布现象. 植物学报 47(6): 551-570.

133. 叶建飞, 陈之端, 刘冰, 覃海宁, 杨永*. 2012. 中国西南与台湾地区维管植物的间断分布格局及形成机制. 生物多样性 20(4): 482-494.

2011

132. China Plant BOL Group, Li Dezhu*, Gao Lianming, Li Hongtao, Wang Hong, Ge Xuejun, Liu Jianquan, Chen Zhiduan, Zhou Shiliang, Chen Shilin, Yang Junbo, Fu Chengxin, Zeng Chunxia, Yan Haifei, Zhu Yingjie, Sun Yongshuai, Chen Siyun, Zhao Lei, Wang Kun, Yang Tuo, Duan Guangwen. 2011. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences USA 108 (49): 19641-19646.

131. Jacques Frédéric M B¹, Wang Wei¹, Ortiz Rosa Del C¹, Li Honglei, Zhou Zhekun, Chen Zhiduan*. 2011. Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae. Journal of Systematics and Evolution 49: 25-49.

130. Li Dezhu*, Liu Jianquan, Chen Zhiduan, Wang Hong, Ge Xuejun, Zhou Shiliang Gao Lianming, Fu Chengxin, Chen Shilin. 2011. Plant in China. Journal of Systematics and Evolution 49(3): 165-168.

129. Ren Hui1, Lu Limin1, Soejima Akiko, Luke Quentin, Zhang Dianxiang, Chen Zhiduan, Wen Jun*. 2011. Phylogenetic analysis of the grape family (Vitaceae) based on the noncoding plastid trnC-petN, trnH-psbA, and trnL-F sequences. Taxon 60(3): 629-637.

128. Sun Ge*, Dilcher David L*, Wang Hongshan, Chen Zhiduan. 2011. A eudicot from the early Cretaceous of China. Nature 471: 624-627.

127. Zhu Xinyu, Ma Hong, Chen Zhiduan*. 2011. Phylogenetics and evolution of Su(var)3-9 SET genes in land plants: rapid diversification in structure and function. BMC Evolutionary Biology 11: 637.

126. 谷婧, 彭勇, 许利嘉, 肖伟, 陈之端, 肖培根*. 2011. 苦丁茶商品的原植物调查与性状鉴别. 中药材 2: 196-199.

125. Zhen Meng, Xiaoguang Lin, Xing He, Yanping Gao, Hongmei Liu, Yong Liu, Yuanchun Zhou, Jianhui Li, Chen Zhiduan, Shouzhou Zhang, Yong Li. 2011. Construction of the Platform for Phylogenetic Analysis. Data Driven e-Science 01.

2010

124. Lin Ruozhu, Zeng Jie, Chen Zhiduan*. 2010. Organogenesis of reproductive structures in Betula alnoides (Betulaceae). International Journal of Plant Sciences 171(6): 586-594 with cover.

123. Liu Cuijing¹, Zhang Jian¹, Zhang Ning¹, Shan Hongyan, Su Kunmei, Zhang Jisi, Meng Zheng, Kong Hongzhi*, Chen Zhiduan*. 2010. Interactions among proteins of floral MADS-box genes in basal Eudicots: Impications for evolution of the regulatory network for flower development. Molecular Biology and Evolution 27(7): 1598-1611.

122. Nie Zelong, Sun Hang, Chen Zhiduan, Meng Ying, Manchester Steven R, Wen Jun*. 2010. Molecular phylogeny and Biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America. American Journal of Botany 97: 1342-1353.

121. Qiu Yinlong*, Li Libo, Wang Bin, Xue Jiayu, Hendry Tory A., Li Ruiqi, Brown Joseph W, Liu Yang, Hudson Geordan T, Chen Zhiduan. 2010. Angiosperm phylogeny inferred from sequences of four mitochondrial genes. Journal of Systematics and Evolution 48(6): 391-425

120. Ren Baoqing, Xiang Xiaoguo, Chen Zhiduan*. 2010. Species identification of Alnus (Betulaceae) using nrDNA and cpDNA genetic markers. Molecular Ecology and Resources 10(4):594-605.

119. Wang Wei, Hu Hao, Xiang Xiaoguo, Yu Shengxiang, Chen Zhiduan*. 2010. Phylogenetic placements of Calathodes and Megaleranthis (Ranunculaceae): Evidence from molecular and morphological data. Taxon 59(6):1712-1720.

118. Wang Qinghua, Jia Yu*, Liu Yang, Zhiduan Chen. 2010. The systematic position of Meteoriella S. Okamura (Musci) based on molecular and morphological data. Taxon 59 (1): 93-100.

117. 任保青, 陈之端^*. 2010. 植物DNA条形码技术 植物学报 45(1): 1-12.

116. 孟珍, 陈之端, 黎建辉, 刘红梅, 何星, 林小光, 张寿洲, 李勇, 胡良霖, 周园春. 2010. "陆地植物系统发育研究的工作平台构建," 计算机工程, vol. 36, pp. 272-275.

2009

115. Wang Wei, Lu Anming, Ren Yi, Mary E. Endress, Chen Zhiduan^*. 2009. Phylogeny and classification of Ranunculales: evidence from four molecular loci and morphological data. Perspectives in Plant Ecology, Evolution and Systematics 11(2): 81-110.

114. Manchester Steven R^*, Chen Zhiduan, Lu Anming, Uemura Kazuhiko. 2009. Eastern Asian endemic seed plant genera and their paleogeographic history throughout the Northern Hemisphere. Journal of Systematics and Evolution 47: 1-42.

113. Thien Leonard B^*, Bernhardt Peter, Devall Margaret S, Chen Zhiduan, Luo Yibo, Fan Jianhua, Yuan Liangchen, Williams Joseph H. 2009. Pollination biology of basal angiosperms (ANITA grade). American Journal of Botany 96: 145-166.

2008

112. Yuan Liangchen, Luo Yibo, Thien LB, Fan Jianhua, Xu Huanli, Yukawa J, Chen Zhiduan^*. 2008. Pollination of Kadsura longipedunculata (Schisandraceae), a monoecious basal angiosperm, by female, pollen-eating Megommata sp. (Cecidomyiidae: Diptera) in China. Biological Journal of the Linnean Society 93: 523-536.

111. Su Kunmei, Zhao Suzhen, Shan Hongyan, Kong Hongzhi, Lu Wenliang, Günter Theissen, Chen Zhiduan*, Meng Zheng*. 2008.The MIK region rather than the C-terminal domain of AP3-like class B floral homeotic proteins determines functional specificity in the development and evolution of petals. New Phytologist 178: 544-558.

110. Liu Yang, Jia Yu*, Wang Wei, Chen Zhiduan, Davis E Christine, Qiu Yinlong. 2008. Phylogenetic relationship of two endemic genera from East Asia: Trichocoleopsis and Neotrichocolea (Hepatica). Annals of the Missouri Botanical Garden 95: 463-474.

109. Zeng Jie, Li Jianhua, Chen Zhiduan*. 2008. A new species of Betula sect. Betulaster (Betulaceae) from China. Botanical Journal of the Linnean Society 156: 523-528.

108. Chen Zhiduan, Ren Hui, Wen Jun. 2008. Leeaceae and Vitaceae. In Flora of China, Wu Zhengyi, Peter Raven (eds.). Beijing: Science Press and St. Louis: Missouri Botanical Garden.

107. Hong Deyuan, Qiu Yinlong, Chen Zhiduan, Michael J Donoghue. 2008. Tracing Patterns of Evolution through the Tree of Life: Introduction. Journal of Systematics and Evolution 46(3): 237-238.

106. Qiu Yinlong, Chen Zhiduan*. 2008. Serving our science and community better. Journal of Systematics and Evolution 46(1): 1-2.

105. 王玛丽，刘红梅，陆树刚，刘占林，陈之端*. 2008. 岩蕨科、球盖蕨科的系统位置：叶绿体DNA trnL-F区序列证据. 植物研究 28(2): 175-178.

104. 洪德元, 陈之端, 仇寅龙. 2008. 历史催人奋进, 未来令人憧憬——纪念中国植物学会成立75周年. Journal of Systematics and Evolution 46(4): 439-440.

2007

103. Zhu Xinyu, Chase WC, Qiu Yinlong, Kong Hongzhi, Li Jianhua, Dilcher DL, Chen Zhiduan*. 2007. Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids. BMC Evolutionary Biology 7: 217.

102. Wang Wei, Chen Zhiduan*. 2007. Generic level phylogeny of Thalictroideae (Ranunculaceae) — implications for the taxonomic status of Paropyrum and petal evolution. Taxon 56 (3): 811-821.

101. Wang Wei, Wang Hengchang, Chen Zhiduan*. 2007. Phylogeny and morphological evolution of tribe Menispermeae (Menispermaceae) inferred from chloroplast and nuclear sequences. Perspectives in Plant Ecology, Evolution and Systematics 8: 141-154.

100. Shan Hongyan, Zhang Ning, Liu Cuijing, Xu Guixia, Zhang Jian, Chen Zhiduan*, Kong Hongzhi*. 2007. Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. Molecular Phylogenetics and Evolution 44: 26-41.

99. Liu Hongmei, Zhang Xianchun*, Wang Wei, Qiu Yinlong, Chen Zhiduan*. Molecular phylogeny of the fern family Dryopteridaceae inferred from chloroplast rbcL and atpB genes. 2007. International Journal of Plant Sciences 168(9): 1311-1323.

98. Liu Hongmei, Zhang Xianchun*, Chen Zhiduan*, Dong Shiyong, Qiu Yinlong. 2007. Polyphyly of the fern family Tectariaceae sensu Ching: Insights from cpDNA sequence data. Science in China 50(6): 789-798.

97. Liu Hongmei, Zhang Xianchun*, Chen Zhiduan, Qiu Yinlong. 2007. Inclusion of the Asiatic endemic genus Sorolepidium in Polystichum (Dryopteridaceae): evidence from the chloroplast rbcL and morphological evidence. Chinese Science Bulletin 52:631-638.

96. Yuan Liangchen, Luo Yibo*, Thien Leonard B, Fan Jianhua, Xu Huanli, Chen Zhiduan. 2007. Pollination of Schisandra henryi (Schisandraceae) by female, pollen-eating Megommata species (Cecidomyiidae, Diptera) in South-central China. Annals of Botany 99: 451-460.

95. Li Jianhua*, Shoup Suzanne, Chen Zhiduan. 2007. Phylogenetic relationships of diploid species of Betula (Betulaceae) inferred from DNA sequences of nuclear nitrate reductase. Systematic Botany 32(2): 357-365.

94. Zhang GM, Zhang XC, Chen Zhiduan, Liu HM, Yang WL. 2007. First insights in the phylogeny of Asian cheilanthoid ferns based on sequences of two chloroplast markers. Taxon 56(2): 369-378.

93. Qiu Yinlong*, Li Libo, Wang Bin, Chen Zhiduan, Knoop Volker, Groth-Malonek M, Dombrovska Olena, Lee Jungho, Kent Livija, Rest Joshua, Estabrook George F, Hendry Tory A, Taylor David W, Testa Christopher M, Ambros Mathew, Crandall-Stotler B, Duff R Joel, Stech Michael, Frey Wolfgang, Quandt Dietmar, Davis Charles C. 2007. The deepest divergences in land plants inferred from phylogenomic evidence. International Journal of Plant Sciences 168(5): 691-708.

92. Jeon, Jeong III, Chang Chinsung*, Chen Zhiduan, Park Tae-Yoon. 2007. Systematic aspects of foliar flavonoids in subsect. Carpinus (Carpinus, Betulaceae). Biochemical Systematics and Ecology 35: 606-613.

91. Wang Wei, Chen Zhiduan, Liu Yang, Li Ruiqi, Li Jianhua*.  2007. Phylogenetic and Biogeographic Diversification of Berberidaceae in the Northern Hemisphere. Systematic Botany 32 (4): 731-742.

90. Chen Zhiduan, Ren Hui, Wen Jun. 2007. Vitaceae. Pp. 173-177 in: Wu, Z.Y. & Raven, P.H. (eds.), Flora of China, vol. 12. Science Press, Beijing, and Missouri Botanical Garden, St. Louis.

2006

89. Liu Zhong, Hao Gang, Luo Yibo, Thien Leonard B, Rosso Samuel W, Lu Anming, Chen Zhiduan*. 2006. Phylogeny and androecial evolution in Schisandraceae, inferred from sequences of nuclear ribosomal DNA ITS and chloroplast DNA trnL-F regions. International Journal of Plant Sciences 167: 539-550.

88. Manchester Steven R, Chen Zhiduan, Zhou Zhequn. 2006. Wood anatomy of Craigia (Malvales) from southeastern Yunnan, China. IAWA Journal 27: 129-136.

87. Qiu Yinlong, Li Libo, Wang Bin, Chen Zhiduan, Knoop Volker, Groth-Malonek M, Dombrovska O, Lee Jungho, Kent Livija, Rest Joshua, Estabrook George F, Hendry Tory A, Taylor David W, Testa Christoopher M, Ambros Mathew, Crandall-Stotler B, Duff R Joel, Stech, Michael, Frey Wichael, Quandt Dietmar, Davis Charles C. 2006. The deepest divergences in land plants inferred from phylogenomic evidence. Proceedings of the National Academy of Sciences USA 103: 15511-15516.

86. Shan Hongyan, Su Kunmei, Lu Wenliang, Kong Hongzhi, Chen Zhiduan*, Meng Zeng*. 2006. Conservation and divergence of candidate class B genes in Akebia trifoliata (Lardizabalaceae). Development Genes and Evolution 216: 785-795.

85. Wang Hengchang, Meng Aiping, Li Jianqiang, Feng Min, Chen Zhiduan*, Wang Wei. 2006. Floral organogenesis of Cocculus Orbiculatus and Stephania Dielsiana (Menispermaceae). International Journal of Plant Sciences 167: 951-960.

84. Wen Jun, Chen Zhiduan*. 2006. Cayratia lanceolata, a new nomenclatural combination in Vitaceae from China. Acta Botanica Yunnanica 28: 471-472.

83. Yuan Yaowu, Zhang Zhiyun, Chen Zhiduan, Olmstead, R.G. 2006. Tracking ancient polyploids: a retroposon insertion reveals an extinct diploid ancestor in the polyploid origin of Belladonna. Molecular Biology and Evolution 23: 2263-2267.

82. Zhu Yuping, Wen Jun, Zhang Zhiyun*, Chen Zhiduan*. 2006. Evolutionary relationships and diversification of Stachyuraceae based on sequences of four chloroplast markers and the nuclear ribosomal ITS region. Taxon 55: 931-940.

81. Zhang Daoyuan*, Zhang Yuan, Gaskin JF, Chen Zhiduan. 2006. Systematic position of Myrtama Ovcz. & Kinz. based on morphological and nrDNA ITS sequence evidence. Science in China 51: 117-123.

80. 种康, 瞿礼嘉, 杨维才, 王台, 王小菁, 袁明, 许亦农, 陈之端, 蒋高明. 2006. 2005年中国植物科学若干领域的重要研究进展. 植物学通报 3.

2005

79. Li Ruiqi, Chen Zhiduan*, Lu Anming. 2005. Organogenesis of the inflorescence and flowers in Platycarya strobilacea (Juglandaceae). International Journal of Plant Sciences 166(3) : 449-457.

78. Yang Y, Geng Baoyin, Dilcher DL*, Chen Zhiduan*, Lott T., 2005. Morphology and affinities of an early Cretaceous Ephedra from China. American Journal of Botany 92(2): 231-242

77. Li Guiseng, Meng Zheng*, Kong Hongzhi, Chen Zhiduan, Lu Anming*, 2005. Characterization of candidate class A, B and E floral homeotic genes from the perianthless basal angiosperm Chloranthus spicatus (Chloranthaceae). Development Genes and Evolution 215 (9): 437-449

76. Wang Wei, Li Ruiqi, Chen Zhiduan*. 2005. Systematic position of Asteropyrum (Ranunculaceae) inferred from chloroplast and nuclear sequences. Plant Systematics and Evolution 255: 41-54.

75. Liu Yang, Jia Yu, Wang Wei, Chen Zhiduan, Qiu Yinlong*, 2005. A taxonomic reassessment of Microdendron inferred from molecular and morphological evidence. The Bryologist 108 (4): 591-599.

74. Zhang Gangmin, Zhang Xianchun, Chen Zhiduan*. 2005. Phylogeny of cryptogrammoid ferns and related taxa based on rbcL sequences. Nordic Journal of Botany 23(4): 485-493.

73. Li Jianhua, Shoup S, Chen Zhiduan*. 2005. Phylogenetics of Betula (Betulaceae) inferred from sequences of nuclear ribosomal DNA. Rhodora 107(929), 69-86.

72. Manchester Steven R*, Chen Zhiduan, Geng Baoyin, Tao Junrong. 2005. Middle Eocene flora of Huadian, Jilin Province, northeastern China. Acta Palaeobotanica 45(1), year 2005: 3-26.

71. 种康, 杨维才, 王台, 瞿礼嘉, 蒋高明, 王小菁, 许亦农, 陈之端, 于昕. 2005. 2004年中国植物科学若干领域研究进展. 植物学通报 4.

2004

70. Chen Zhiduan, Li Jianhua, 2004. Phylogenetics and biogeography of Alnus (Betulaceae) inferred from sequences of nuclear ribosomal DNA ITS region. International Journal of Plant Sciences 165(2): 325-335.

69. Li Ruiqi, Chen Zhiduan, Lu Anming, Soltis Douglas E, Soltis Pamela S, Manos, Paul S, 2004. Phylogenetic relationships in Fagales based on DNA sequences from three genomes. International Journal of Plant Sciences 165(2): 311-324.

68. Chen Iju*, Manchester Steven R, Chen Zhiduan, 2004. Anatomically preserved seeds of Nuphar (Nymphaeaceae) from the Early Eocene of Wutu, Shandong Province, China. American Journal of Botany 91(8): 1265-1272.

67. Xiang Qiuyun, Zhang Wenheng, Ricklefs Robert E, Qian Hong, Chen Zhiduan, Wen Jun, Li Jianhua, 2004. Regional differences in rates of plant speciation and molecular evolution: A comparison between eastern Asia and eastern North America. Evolution 2175-2184.

66. 汤彦承*, 路安民, 陈之端. 2004. 生花植物概念简介及其名称的商榷. 云南植物研究 26(5): 475-481.

65. 洪亚平, 代子闻, 陈之端, 李富才. 2004. 木犀科梣属 (Fraxinus) 三心皮子房的确证及其系统学意义. 河南林业科技 1.

2003

64. Zhang Wenheng, Chen Zhiduan*, Li Jianhua, Chen Hubiao, Tang Yancheng, 2003. Phylogeny of the Dipsacales s.l. based on chloroplast trnL-F and ndhF sequences. Molecular Phylogenetics and Evolution 26:176-189.

63. Kang Yun, Zhang Mingli*, Chen Zhiduan. 2003. A preliminary phylogenetic study of the subgenus Pogonophace (Astragalus) in China based on ITS sequence data. Acta Botanica Sinica 45(2): 140-145.

62. Meng Shaowu, Andrew W. Douglas, Li Dezhu*, Chen Zhiduan, Liang Hanxing, Yang Junbo. 2003. Phylogeny of Saururaceae based on morphology and five regions from three plant genomes. Annals of the Missouri Botanical Garden 90(4):592-602.

61. Peng Yalin, Chen Zhiduan, Gong Xun, Zhong Yang, Shi Suhua*. 2003. Phylogenetic position of Dipentodon sinicus: evidence from DNA sequences of chloroplast rbcL, nuclear ribosomal 18S, and mitochondrial matR genes. Botanical Bulletin of Academia Sinica 44: 217-222.

60. Li Guisheng*, Meng Zheng,Kong Hongzhi，Chen Zhiduan，Lu Anming. 2003. ABC model and floral evolution. Chinese Science Bulletin 48(23): 2415-2421 (in Chinese); 48 (24): 2651-2657 (in English).

59. Ren Hui，Pan Kaiyu，Chen Zhiduan*，Wang Renqing, 2003. Structural characters of leaf epidermis and their systematic significance in Vitaceae. Acta Phytotaxonomica Sinica 41(6): 531-544。

58. Wang Mali, Chen Zhiduan, Zhang Xianchun, Lu Shugang, Zhao Guifang*, 2003, Phylogeny of the Athyriaceae: evidence from chloroplast trnL-F region sequences. Acta Phytotaxonomica Sinica 41(5): 416-426.

57. 吴征镒, 汤彦承, 路安民, 陈之端, 李德铢. 2003. 中国被子植物科属综论. 科学出版社, 北京. [Wu Zhengyi, Tang Yancheng, Lu Anming, Chen Zhiduan, Li Dezhu, 2003. The familiesand genera of angiosperms in China. Science Press, Beijing (pages 1400).]

56. 张原*, 陈之端. 2003. 分子进化生物学中序列分析方法的新进展. 植物学通报, 20(4): 462-468.

2002

55. Kong Hongzhi*, Chen Zhiduan, Lu Anming. 2002. Phylogeny of Chloranthus (Chloranthaceae) based on nulear ribosomal ITS and plastid trnL-F sequence data. American Journal of Botany

89: 940-946.

54. Liu Jianquan*, Chen Zhiduan, Lu Anming. 2002. Molecular evidence for the sister relationship of the eastern Asia-North American intercontinental species pair in the Podophyllum group (Berberidaceae). Botanical Bulletin of Academic Sinica 43(2): 147-154.

53. Liu Jianquan*, Gao Tiangang, Chen Zhiduan, Lu Anming. 2002. Molecular phylogeny and biogeography of the Qinghai-Tibet Plateau endemic Nannoglottis (Asteraceae). Molecular Phylogenetics and Evolution 23(3): 307-325.

52. Li Ruiqi, Chen Zhiduan*, Hong Yaping, Lu Anming. 2002. Phylogenetic relationships of the“higher” hamamelids based on chloroplast trnL-F sequences. Acta Botanica Sinica 44(12): 1462-1468.

51. Meng Shaowu, Chen Zhiduan, Li Dezhu*, Liang Hanxing. 2002. Phylogeny of Saururaceae based on mitochondrial matR gene sequence data. Journal of Plant Research 115(2): 71-76.

50. Tang Yancheng*, Lu Anming, Chen Zhiduan, Zhang Yuan, Zhang Fumin. 2002. On extant primitive angiosperms and their phytogeography. Acta Phytotaxonomica Sinica 40(3): 242-259.

49. Wu Zhengyi, Tang Yancheng, Lu Anming, Chen Zhiduan, Li Dezhu. 2002. Synopsis of a new “polyphyletic-polychronic-polytopic” system of the angiosperms. Acta Phytotaxonomica Sinica 40(4): 289-322.

48. 洪亚平, 陈之端*. 2002. 易卷曲叶表皮制片技术(NaOCl法)的改进. 植物学通报, 06期

2001

47. Chen Zhiduan, Xing Shuping, Liang Hanxing, Lu Anming, 2001. Morphogenesis of female reproductive organs of Carpinus turczaninowii and Ostryopsis davidiana (Betulaceae). Acta Botanic Sinica 43(11): 1110-1114.

46. Meng Shaowu, Chen Zhiduan, Li Dezhu, Liang Hanxing, 2001. Phylogeny of Saururaceae inferred from matR sequence data. Acta Botanica Sinica 43(6): 653-656.

45. Liu Jianquan, Chen Zhiduan, Lu Anming, 2001. A preliminary study of the phylogeny of the Swertiinae based on ITS data (Gentianaceae). Israel Journal of Plant Sciences 49(4): 302-308.

44. Liu Jianquan^*, Chen Zhiduan, Liao Zhixin, Lu Anming, 2001. A comparison of ITS sequences of Tibetan medicine”Zang YIN Chen”-Swertia mussotti and its adulterant species. Acta Pharmaceutica Sinica 36(1): 67-70.

43. 陈之端, 路安民 2001. 桦木科植物的系统发育和演化. 中国科学院院刊 16(3): 188-191.

42. 洪亚平, 陈之端^*, 路安民. 2001. 根据ITS序列证据重建防己科蝙蝠葛族的系统发育. 植物分类学报 39(2): 97-104.

41. 洪亚平, 潘开玉, 陈之端^*, 路安民. 2001. 防己科植物的叶表皮特征及其系统学意义. 植物学报 43(6): 615-623.

40. 孔昭宸, 陈之端, 陈灵芝. 2001. 生物多样性起源和变化. 在陈灵芝, 马克平 (主编) 生物多样性科学: 原理与实践. 上海: 上海科学技术出版社, 66-92.

39. 刘建全*, 陈之端, 路安民. 2001. 藏药雪莲原植物水母雪莲及其混淆种类的ITS序列比较和分子鉴定. 中草药, 05期

38. 张文蘅, 陈之端, 陈虎彪, 汤彦承. 2001. 从叶绿体DNA trnL-F序列论双参属的归属问题. 植物分类学报, 39(04): 337-344.

37. 陈之端*. 2001. 分类学中的新生长点——植物分子系统学. 植物杂志, 05期.

2000及以前

36. Liu Jianquan, Chen Zhiduan, Lu Anming. 2000. The Phylogentic relationships of an endemic genus Sinadoxa in Qinghai Xizang Plateau: evidence from ITS sequences analysis. Acta Botanica Sinica 42(6): 656-658

35. Kong Hongzhi, Chen Zhiduan. 2000. Phylogeny in Chloranthus Swartz. (Chloranthaceae) inferred from sequence analysis of nrDNA ITS region. Acta Botanica Sinica 43(7):762-764

34. Qiu Yinlong, Lee Jungho, Bernasconi-Quadroni F, Soltis Douglas E, Soltis Pamela S, Zanis Michael, Zimmer Elizabeth A, Chen Zhiduan, Savolainen Vincent, Chase Mark W. 2000. Phylogeny of basal angiosperms: analysis of five genes from three genomes. International Journal of Plant Sciences 161 (6 Suppl.): S3-S27.

33. Song Baohua, Chen Zhiduan, Wang Xiaoquan, Li Fazeng. 2000. Sequence analysis of the ITS region in Amaranthus. Acta Botanica Sinica 42(11): 1184-1189

32. Liu Zhong, Wang Xiaoquan, Chen Zhiduan, Lin Qi, Lu Anming. 2000. Phylogeny of Schisandraceae inferred from sequence analysis of nrDNA ITS region. Acta Botanica Sinica 42(7): 758-761

31. 张道远, 陈之端, 孙海英, 尹林克, 潘伯荣2000. 用核糖体DNA的ITS序列探讨中国柽柳科植物系统分类中的几个问题. 西北植物学报, 03期

30. Chen Zhiduan, Manchester Steven R, Sun Haiying, 1999. Phylogeny and evolution of the Betulaceae as inferred from DNA sequences, morphology, and paleobotany. American Journal of Botany 86(8): 1168-1181.

29. Feng Yuxing, Chen Zhiduan, Wang Xiaoquan, Pan Kaiyu, Hong Deyuan. 1999. A taxonomical Revision of the Loropetalum-Tetrathyrium complex and its systematic position in Hamamelidoideae inferred from ITS sequences. Taxon 48:689-700.

28. Lu Anming, Zhang Zhiyun, Chen Zhiduan, Pan Kaiyu. 1999. Embryology and adaptive ecology in the genus Przewalskia. In Solanaceae IV. (M.Nee, et al. eds). 71-80. The Royal Botanic Gardens, Kew.

27. Qiu Yinlong, Lee Jungho, Bernasconi-Quadron F, Soltis Douglas E, Soltis Pamela S, Zanis Michael, Zimmer Elizabeth A, Chen Zhiduan, Savolainen Vincent, Chase Mark W, 1999. The earliest angiosperms: evidence from mitochodrial, plastid and nuclear genomes. Nature 402: 404-407.

26. Hu Yufan, Chen Zhiduan, Chen CJ, Geng Baoyin. 1999. Discoveries of some fossils of cycad reproductive organs from China and their significance to the origin of cycads. Chen CJ (ed.) Biology and Conservation of Cycads. Beijing: International Academic Publishers.

25. Hilton, J, Wang, SJ, Chen Zhiduan, Tian, BL. 1999. Endemic fossil seed plants from China and a reassessment of coniferophyte phylogeny. Progress in Natural Science 9(10): 767-774.

24. 汤彦承, 路安民, 陈之端. 1999. 一个被子植物“目”的新分类系统简介. 植物分类学报, 06期

23. 陈之端. 1999. 桦木科植物的起源和散布. 在路安民 (主编). 种子植物科属地理. 科学出版社, 北京. 236-258.

22. Chen Zhiduan, Wang Xiaoquan, Sun Haiying, Han Ying, Lu Anming. 1998. The systematic position of the Rhoipteleaceae: evidence from nuleotide sequences of rbcL gene. Acta Phytotaxonomica Sinica 36(1): 1-7.

21. Manchester Steven R, Chen Zhiduan. 1998. A new genus of Coryloideae (Betulaceae) from the Paleocene of North America. International Journal of Plant Sciences 159(3): 522-532.

20. 吴征镒, 汤彦承, 路安民, 陈之端. 1998. 试论木兰植物门的一级分类——一个被子植物八纲系统的新方案. 植物分类学报, 05期.

19. 邢树平, 陈之端, 路安民. 1998. Ostrya virginiana(Betulaceae)的胚珠和胚囊发育及其系统学意义. 植物分类学报, 05期.

18. 孙坤, 陈家宽, 陈之端.1998. 被子植物系统学中花发育研究的进展及对今后研究的思考. 植物分类学报, 06期

17. 洪亚平, 钟扬, 陈之端. 1998. 交互分类信息系统和电子植物志的设计与实现──Ⅱ.分类排列和"系统学处理"软件系统. 武汉植物学研究, 04期.

16. 陈之端, 冯旻编译. 路安民, 葛颂, 汪小全, 孔宏智校. 1998. 植物系统学进展. 科学出版社, 北京.

15. Chen Zhiduan, Lu Anming. 1997. Origin and early evolution of angiosperms: retrospect and prospects. Acta Phytotaxonomica Sinica 35(4): 375-384.

14. Tang Yancheng, Lu Anming, Chen Zhiduan. 1997. The living fossil plants-rescue, conservation and studies in urgent demand. Chinese Biodiversity 5(4): 307-308.

13. Manchester Steven R, Chen Zhiduan. 1996. Palaeocarpinus sp. nov. (Betulaceae) form the Paleocene of Wyoming, U.S.A. International Journal of Plant Sciences 157(5): 644-655.

12. Liang Hanxing, Pan Kaiyu, Chen Zhiduan. 1996. Floral organogenesis in Saururus chinensis (Saururaceae). Acta Phytotaxonomica Sinica 34(6): 565-568.

11. Chen Zhiduan, Zhang Zhiyun, Lu Anming. 1995. Solanaceae and Cucurbitaceae, in Wang Wentsai (ed.). Vascular Plants of Wulingshan Mountains. 413-416, 449-452, Beijing: Science Press.

10. 陈之端, 路安民*. 1995. 桦木科植物的起源和早期分化. 中国科学院研究生院学报 12 (2): 199-204.

9. 路安民, 陈之端. 1994. 被子植物系统学的原理和方法. 在: 陈家宽, 杨继, 主编 植物进化生物学. 武汉: 武汉大学出版社. pp. 280-308.

8. Chen Zhiduan, 1994. Phylogeny and phytogeography of the Betulaceae(I). Acta Phytotaxonomica Sinica 32(1): 1-32. [陈之端 1994. 桦木科植物的系统发育和地理分布. 植物分类学报 32(1), 1-31.]

7. Chen Zhiduan. 1994. Phylogeny and phytogeography of the Betulaceae(II). Acta Phytotaxonomica Sinica 32(2): 101-153. [陈之端 1994. 桦木科植物的系统发育和地理分布(续). 植物分类学报 32(2), 101-153.]

6. Zhang Zhiyun, Chen Zhiduan. 1994. Embryology of the genus Carpinus L. and its systematic significance. Cathaya 5: 59-68.

5. Chen Zhiduan. 1991. Pollen morphology of the Betulaceae. Acta Phytotaxonomica Sinica 29(6): 494-503.

4. Chen Zhiduan, Zhang Zhiyun. 1991. A study on foliar epidermis in the Betulaceae. Acta Phytotaxonomica Sinica 29(2): 156-163.

3. Chen Zhiduan, Lu Anming, Pan Kaiyu. 1991. The embryology of the genus Ostryopsis (Betulaceae). Cathaya 2: 53-62.

2. Chen Zhiduan, Luo Yibo. 1990. An investigation on forest vegetation in Tiane County of Guangxi. Plants 17(2): 18-19. (cover photo).

1. 徐孝庆, 陈之端. 1987. 毛白杨人工林生物量的初步研究. 南京林业大学学报 1: 130-136.

书评与科普文章等：

李波. 2021. 让“维管植物生命之树”在祖国大地上枝繁叶茂 —— 读《中国维管植物生命之树》有感. 科学. 73（1）：58-62.

李勇. 2020.中国维管植物生命之树. 科技成果管理与研究. 168（10）：封三.

陈之端. 2013. 人类离不开植物. 科学世界 12期，卷首语.

陈之端，路安民. 2012. 植物系统学（原著第二版：Plant Systematics by Michael G. Simpson）导读. 北京：科学出版社.

陈之端，孙苗. 2012. 植物系统学（原著第二版：Plant Systematics by Michael G. Simpson）前言. 北京：科学出版社.