姓  名: 焦远年
职务/职称: 研究员
联系电话: 010-62836077
电子邮件: jiaoyn@ibcas.ac.cn
个人网页:
课 题 组: 生物信息学和植物基因组进化研究组
焦远年,男,博士,研究员,博士生导师。

2004年获中国农业大学学士学位,2011年获美国宾夕法尼亚州立大学博士学位。20112014年分别在宾夕法尼亚州立大学、佐治亚大学从事博士后研究。2015年引进到中国科学院植物研究所系统与进化植物学国家重点实验室工作,成立了生物信息学和植物基因组进化研究组。 

主要研究方向: 

1)生物信息学: 

大数据时代的到来预示着生物领域的飞速发展,而生物信息学的研究也越来越重要。我们可以利用基因组、转录组、表观基因组和表型组等数据来挖掘基因、基因家族和基因组的变化对植物适应性的重要贡献。 

2)植物基因组进化: 

地球上现有的被子植物超过30万种,属于陆地植物最繁荣以及形态最多样化的一个分支。早在1879年,达尔文就将被子植物的突然出现并快速分化称作讨厌之谜abominable mystery,而这个讨厌之谜一直都是古植物学中的重大科学问题。利用大规模DNA测序和其他组学数据,我们可以更好地研究植物进化过程基因组水平的变化,进一步探索物种形成和迅速分化的机制。 

3)多倍化及其重要意义: 

多倍化事件在真核生物进化过程中起到了极其重要的作用,揭示植物进化过程中曾发生的多倍化事件,对研究基因组加倍在物种形成及创新性功能产生上的贡献是十分必要的,并且对于鉴别类群间真正的直系同源基因也具有极其重要的指导意义。 

主持科研项目:

主持中国科学院战略性先导科技专项(A类)子课题特色观赏和药用植物的基因标识研究与关键物种的产地溯源XDA230802032019-012023-12200万元);

主持国家自然科学基金委员会面上项目多倍化后小麦基因组和三维基因组结构变异及其进化意义的研究318702092019-012022-1260万元);

研究论文(*为通讯作者): 

2020

Wu Shengdan, Han Baocai, Jiao Yuannian*. 2020. Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms. Molecular Plant 13(1): 59-71.

Zhang Xiaoxia, Li Xiaoxia, Zhao Ran, Zhou Yun, Jiao Yuannian*. 2020. Evolutionary strategies drive a balance of the interacting gene products for the CBL and CIPK gene families. New Phytologist 226(5):1506-1516.

Liu Ping-Li #, Zhang Xi#, Mao Jian-Feng #, Hong Yan-Ming #, Zhang Ren-Gang, Yilan E., Nie Shuai, Jia Kaihua, Jiang Chen-Kun, He Jian, Shen Weiwei, He Qizouhong, Zheng Wenqing, Abbas Samar, Jewaria Pawan Kumar, Tian Xuechan, Liu Chang-jun, Jiang Xiaomei, Yin Yafang, Liu Bo, Wang Li, Jin Biao, Ma Yongpeng, Qiu Zongbo, Balu?ka Franti?ek, ?amaj Jozef, He Xinqiang, Niu Shihui, Xie Jianbo, Xie Lei, Xu Huimin, Kong Hongzhi, Ge Song, Dixon Richard A., Jiao Yuannian*, Lin Jinxin*. 2020. The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements. Genome Biology 21(1):291.

Xie Jinghe#, Zhao Haifeng#, Li Kunpeng#, Zhang Rui, Jiang Yongchao, Wang Meimei, Guo Xuelian, Yu Ben, Kong Hongzhi*, Jiao Yuannian*, Xu Guixia*. 2020. A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis. Horticulture Research 7(1):113.

Zhang Liangsheng#*, Wu Shengdan#, Chang Xiaojun, Wang Xiuyun, Zhao Yunpeng, Xia Yiping, Trigiano Robert N., Jiao Yuannian*, Chen Fei*. 2020. The ancient wave of polyploidization events in flowering plants and their facilitated adaptation to environmental stress. Plant Cell and Environment 43(12):2847-2856.

Ali Roshan*, Jiao Yuannian, Kerr Wall P, Patching Simon G*. 2020. Ahmad Irshad; Lutfulla Ghosia; dePamphilis Claude W; In silico identification and structure function analysis of a putative coclaurine N-methyltransferase from Aristolochia fimbriata. Computational Biology and Chemistry 85: 107201.

Chen Yongming, Song Wanjun, Xie Xiaoming, Wang Zihao, Guan Panfeng, Peng Huiru, Jiao Yuannian, Ni Zhongfu, Sun Qixin, Guo Weilong*. 2020. A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era. Molecular Plant 13(12):1694-1708.

Liu Jin#, Shi Cong#, Shi Cheng-Cheng#, Li Wei#, Zhang Qun-Jie#, Zhang Yun, Li Kui, Lu Hui-Fang, Shi Chao, Zhu Si-Tao, Xiao Zai-Yun, Nan Hong, Yue Yao, Zhu Xun-Ge, Wu Yu, Hong Xiao-Ning, Fan Guang-Yi, Tong Yan, Zhang Dan, Mao Chang-Li, Liu Yun-Long, Hao Shi-Jie, Liu Wei-Qing, Lv Mei-Qi, Zhang Hai-Bin, Liu Yuan, Hu-tang Ge-Ran, Wang Jin-Peng, Wang Jia-Hao, Sun Ying-Huai, Ni Shu-bang, Chen Wen-Bin, Zhang Xing-Cai, Jiao Yuan-Nian, Eichler Evan, Li Guo-hua, Liu Xin*, Gao Li-Zhi*. 2020. The chromosome-based rubber tree genome provides new insights into spurge genome evolution and rubber biosynthesis. Molecular Plant 13(2): 336-350.

Zhang Jian#, Fu Xin-Xing#, Li Rui-Qi#, Zhao Xiang#, Liu Yang#, Li Ming-He#, Zwaenepoel Arthur#, Ma Hong, Goffinet Bernard, Guan Yan-Long, Xue Jia-Yu, Liao Yi-Ying, Wang QingFeng, Wang Qing-Hua, Wang Jie-Yu, Zhang Guo-Qiang, Wang Zhi-Wen, Jia Yu, Wang Mei-Zhi, Dong Shan-Shan, Yang Jian-Fen, Jiao Yuan-Nian, Guo Ya-Long, Kong Hong-Zhi, Lu An-Ming, Yang Huan-Ming, Zhang Shou-Zhou*, Van de Peer Yves*, Liu Zhong-Jian*, Chen Zhi-Duan*. 2020. The hornwort genome and early land plant evolution. Nature Plants 6: 107-118.

Zhang Liangsheng*#, Chen Fei#, Zhang Xingtan#, Li Zhen#, Zhao Yiyong#, Lohaus Rolf#, Chang Xiaojun#, Dong Wei, Ho Simon Yw, Liu Xing, Song Aixia, Chen Junhao, Guo Wenlei, Wang Zhengjia, Zhuang Yingyu, Wang Haifeng, Chen Xuequn, Hu Juan, Liu Yanhui, Qin Yuan, Wang Kai, Dong Shanshan, Liu Yang, Zhang Shouzhou, Yu Xianxian, Wu Qian, Wang Liangsheng, Yan Xueqing, Jiao Yuannian, Kong Hongzhi, Zhou Xiaofan, Yu Cuiwei, Chen Yuchu, Li Fan, Wang Jihua, Chen Wei, Chen Xinlu, Jia Qidong, Zhang Chi, Jiang Yifan, Zhang Wanbo, Liu Guanhua, Fu Jianyu, Chen Feng, Ma Hong, Van de Peer Yves, Tang Haibao. 2020. The water lily genome and the early evolution of flowering plants. Nature 577(7788): 79-84.

2019

Guo Hui#, Jiao Yuannian#, Tan Xu, Wang Xiyin, Huang Xianzhong, Jin Huizhe, Paterson Andrew H.*. 2019. Gene duplication and genetic innovation in cereal genomes. Genome Research 29(2): 261-269.

Yoshida Satoko, Kim Seungill, Wafula Eric, Tanskanen Jaakko, Kim Yong-Min, Honaas Loren, Yang Zhenzhen, Spallek Thomas, Conn Caitlin, Ichihashi Yasunori, Cheong Kyeongchae, Cui Songkui, Der Joshua, Gundlach Heidrun, Jiao Yuannian, Hori Chiaki, Ishida Juliane K., Kasahara Hiroyuki, Kiba Takatoshi, Kim Myung-Shin, Koo Namjin, Laohavisit Anuphon, Lee Yong-Hwan, Lumba Shelley, McCourt Peter, Mortimer Jenny, Mutuku Musembi, Nomura Takahito, Yuko Sasaki-Sekimoto, Seto Yoshiya, Wang Yu, Wakatake Takanori, Sakakibara Hitoshi, Demura Taku, Yamaguchi Shinjiro, Yoneyama Koichi, Manabe Ri-ichiroh, Nelson David C., Schulman Alan, Timko Michael, dePamphilis Claude., Choi Doil, Ken Shirasu*. 2019. Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism. Current Biology 29(18): 3041-3052. e3044.

2018

Rusch Michael#, Nakitandwe Joy#, Shurtleff Sheila#, Newman Scott#, Zhang Zhaojie, Edmonson Michael, Parker Matthew, Jiao Yuannian, Ma Xiaotu, Liu Yanling, Gu Jiali, Walsh Michael, Becksfort Jared, Thrasher Andrew, Li Yongjin, Mcmurry James, Hedlund Erin, Patel Aman, Easton John, Yergeau Donald, Vadodaria Bhavin, Tatevossian Ruth G, Raimondi Susana, Hedges Dale, Chen Xiang, Hagiwara Kohei, Mcgee Rose, Robinson Giles, Klco Jeffery, Gruber Tanja, Ellison David *, Downing James*, Zhang Jinghui*. 2018. Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome. Nature Communications 9(1): 3962.

Jiao Yuannian*. 2018. Double the genome, double the fun: Genome duplications in angiosperms, Molecular Plant 11(3): 357-358.

Hu Yiheng#, Zhao Ran#, Xu Peng, Jiao Yuannian*. 2018. The genome of opium poppy reveals evolutionary history of morphinan pathway. Genomics Proteomics & Bioinformatics 16(6): 460-462.2017.

2017

Zhao GY, Zou C, Li K, Wang K, Li TB, Gao LF, Zhang XX, Wang HJ, Yang ZJ, Liu X, Jiang WK*, Mao L*, Kong XY*, Jiao YN*, Jia JZ*. 2017. The Aegilops tauschii genome reveals multiple impacts of transposons. Nature Plants 3(12): 946-955.

2015

Juan Pu, Shuoguo Wang, Yanbo Yin, Guozhong Zhang, Robert A Carter, Jinliang Wang, Guanlong Xu, Honglei Sun, Min Wang, Chu Wen, Yandi Wei, Dongdong Wang, Baoli Zhu, Gordon Lemmon, Yuannian Jiao, Susu Duan, Qian Wang, Qian Du, Meng Sun, Jinnan Bao, Yipeng Sun, Jixun Zhao, Hui Zhang, Gang Wu, Jinhua Liu, Robert G Webster. 2015. Evolution of the H9N2 influenza genotype that facilitated the genesis of the novel H7N9 virus. Proc Natl Acad Sci U S A. 112(2):548-53. 

2014

Yuannian Jiao*, Jingping Li*, Haibao Tang*, Andrew H. Paterson. 2014. Integrated Syntenic and Phylogenomic Analyses Reveal an Ancient Genome Duplication in Monocots. Plant Cell. 26(7):2792-802 (* equal contribution) 

Yuannian Jiao and Andrew H. Paterson. 2014. Polyploidy-associated genome modifications during land plant evolution. Philosophical Transactions of the Royal Society B. 369(1648) .

Yuannian Jiao* and Hui Guo .2014. Prehistory of the angiosperms: characterization of the ancient genomes. Advances in Botanical Research, Volume 69, ISSN 0065-2296 (* corresponding author) .

2013

Amborella Genome Project. 2013. The Amborella genome and the evolution of flowering plants. Science. 342 (6165) DOI: 10.1126/science.1241089 (Major contributor for Global Gene Family Analysis) . 

Ray Ming, Robert VanBuren, Yanling Liu, Mei Yang, Yuepeng Han, Lei-Ting Li, Qiong Zhang, Min-Jeong Kim, Michael C Schatz, Michael Campbell, Jingping Li, John E Bowers, Haibao Tang, Eric Lyons, Ann A Ferguson, Giuseppe Narzisi, David R Nelson, Crysten E Blaby-Haas, Andrea R Gschwend, Yuannian Jiao, Joshua P Der, Fanchang Zeng, Jennifer Han, Xiang Jia Min, Karen A Hudson, Ratnesh Singh, Aleel K Grennan, Steven J Karpowicz, Jennifer R Watling, Kikukatsu Ito et al. 2013. Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.). Genome Biology. 14:R41 doi:10.1186/gb-2013-14-5-r41.

Barbara J Bliss, Stefan Wanke, Abdelali Barakat, Saravanaraj Ayyampalayam, Norman Wickett, P Kerr Wall, Yuannian Jiao, Lena Landherr, Paula E Ralph, Yi Hu, Christoph Neinhuis, Jim Leebens-Mack, Kathiravetpilla Arumuganathan, Sandra W Clifton, Siela N Maximova, Hong Ma and Claude W dePamphilis. 2013. Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies. BMC Plant Biology. 13(1): 13.

Yeting Zhang, Monica Fernandez-Aparicio, Eric K Wafula, Malay Das, Yuannian Jiao, Norman J Wickett, Loren A Honaas, Paula E Ralph, Martin F Wojciechowski, Michael P Timko, John I Yoder, James H Westwood and Claude W dePamphilis. 2013. Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species. BMC Evolutionary Biology. 13:48.

2012

Yuannian Jiao, Jim Leebens-Mack, Saravanaraj Ayyampalayam, John Bowers, Michael McKain, Joel McNeal, Megan Rolf, Daniel Ruzicka, Eric Wafula, Norman Wickett, Xiaolei Wu, Yong Zhang, Jun Wang, Yeting Zhang, Eric Carpenter, Micheal Deyholos, Toni Kutchan, Andre Chanderbali, Pamela Soltis, Dennis Stevenson, Richard McCombie, Chris Pires, Gane KA-SHU Wong, Douglas Soltis, Claude dePamphilis. 2012. A genome triplication associated with early diversification of the core eudicots. Genome Biology. 13(1): R3.

Joshua Adams, Ardeshir Adeli, Chuan-Yu Hsu, Richard Harkess, Grier PAGE, Claude dePamphilis, Yuannian Jiao, Emily Schultz, Cetin Yüceer. 2012. Characterization of Poplar ZIP Family Members ZIP1.2 and ZNT1. Journal of Plant Genetics and Transgenics. 3(1):1-13.

2011

Yuannian Jiao, Norman J. Wickett, Saravanaraj Ayyampalayam, André S. Chanderbali, Lena Landherr, Paula E. Ralph, Lynn P. Tomsho, Yi Hu, Haiying Liang, Pamela S. Soltis, Douglas E. Soltis, Sandra W. Clifton, Scott E. Schlarbaum, Stephan C. Schuster, Hong Ma, Jim Leebens-Mack, Claude W. dePamphilis. 2011.  Ancestral polyploidy in seed plants and angiosperms. Nature. 473(7345):97-100.

Haiying Liang, Saravanaraj Ayyampalayam, Norman Wickett, Abdelali Barakat, Yi Xu, Lena Landherr, Paula E. Ralph, Yuannian Jiao, Tao Xu, Scott E. Schlarbaum, Hong Ma, James H. Leebens-Mack, Claude W. dePamphilis .2011. Generation of a large-scale genomic resource for functional and comparative genomics in Liriodendron tulipifera L. Tree Genetics and Genomes 7(5):941-954.

Andrea Zuccolo, John E. Bowers, James C. Estill, Zhiyong Xiong, Meizhong Luo, Aswathy Sebastian, Jose’ Luis Goicoechea, Kristi Collura, Yeisoo Yu, Yuannian Jiao, Haibao Tang, Steve Rounsley, Dave Kudrna, Andrew H. Paterson, J. Chris Pires, Doug Soltis, Srikar Chamala, Brad Barbazuk, Pam Soltis, Victor A Albert, Hong Ma, Claude dePamphilis, Rod A. Wing and Jim Leebens-Mack .2011. A Physical Map for the Amborella Genome Sheds Light on the Evolution of Angiosperm Genome Structure. Genome Biology. 12(5): R48.

2010及以前 

Huanjun Guo*, Yuannian Jiao*, Chao Di, Dongxia Yao, Gaihua Zhang, Xue Zheng, Lan Liu, Qunlian Zhang, Aiguang Guo, Zhen Su .2009. Discovery of Arabidopsis GRAS Family Genes Responded to Osmotic and Drought Stress. Chinese Bulletin of Botany. 44 (3): 290-299 (*contributed equally) .