姓  名: 冉进华
职务/职称: 研究员
联系电话: (86)-010-62836491
电子邮件:
个人网页: http://www.lseb.cn/rcpy/dsjj/bd/rjh/
课 题 组: 分子进化与分子生物地理学创新研究组
冉进华,女,博士,研究员,博士生导师。

中国科学院植物研究所研究员,博士生导师。2001年于浙江大学获学士学位,2007年于中国科学院植物研究所获博士学位并留所工作,历任助理研究员(2007-2011)、副研究员(2012-2018)和研究员(2019-至今)。2012.11-2013.10在美国University of California, Irvine进行合作研究,合作导师Brandon S. Gaut教授。主要从事裸子植物的分子系统学、生物地理学、分子进化和保护生物学研究。近年来在植物DNA甲基化以及裸子植物的亲缘关系、生物地理学和保护生物学等研究方面取得了重要成果;主要研究工作发表在Nat PlantsProc R Soc BBMC BiolJ Integr Plant BiolMol Phylogenet EvolBMC Evol BiolAnn Bot等国际主流刊物上。2012年入选中国科学院青年创新促进会会员,2017年入选中国科学院青年创新促进会优秀会员。

主要研究方向

1裸子植物的系统发生与生物地理学研究

利用系统发生基因组学(Phylogenomics)方法,从多个层次对裸子植物的系统发生关系进行研究,揭示其生物地理学历史,探讨重要的进化事件和物种多样性的形成机制。

2裸子植物的分子进化研究

对包括裸子植物在内的陆地植物主要支系进行研究,结合基因组、转录组、甲基化组等多组学多维度的研究手段,揭示裸子植物进化过程中DNA甲基化、线粒体、叶绿体和核基因组等的进化规律,探讨关键基因的进化模式及其对生物进化的影响。

 3裸子植物的保护生物学研究

对中国裸子植物物种的采集历史、保护现状及未来的保护策略等进行研究,为我国未来保护区的规划和调整提供重要的数据参考;结合群体遗传学、表观组学和景观基因组学等方法,揭示一些重要裸子植物物种的遗传多样性、群体分化和动态历史,探讨其应对全球变化的响应潜力,为其可持续种群管理提供参考。

主持和参加的科研项目

1.国家重点研发计划项目代表性珍稀濒危植物的保育和种群恢复技术2022YFF1301702022.09-2026.08),课题骨干。

2.中国科学院A类战略性先导科技专项项目自然保护地健康管理与生态廊道设计技术XDA230800002019.01-2023.12),参与。

3.国家自然科学基金面上项目裸子植物基因DNA甲基化的进化研究317702382018.01-2021.12),主持人

4.中国科学院青年创新促进会优秀会员人才专项(2017-2019),主持人

5.国家重点研发计划项目全球变化对北半球木本植物多样性的影响2017-2022),课题骨干

6.中国科学院前沿科学重点研究项目松柏类植物及其近缘类群的适应性进化研究2017-2022),参与

7.国家自然科学基金面上项目裸子植物线粒体基因组的进化研究31370250, 2014.01-2017.12),主持人

8.国家自然科学基金重点项目青藏高原植物辐射式物种形成的机制研究2014-2018),参与

9.中国科学院青年创新促进会人才专项(2012-2015),主持人

10. 科技部科技基础性工作专项植物重要类群DNA条形码之植物的分子标记筛选2011.01-2015.12),专题主持人

11. 国家自然科学基金面上项目云杉属的辐射分化与生物地理学研究No. 308701662009.1-2011.12),主持人

12. 国家重点实验室项目“CAD/SAD基因家族的进化研究,(2008-2009),主持人

代表性论文 (#:共同第一作者,*:通讯作者)

2022

1.Huang K-Y, Kan S-L, Shen T-T, Gong P, Feng Y-Y, Du H, Zhao Y-P, Wan T, Wang X-Q, Ran J-H*. 2022. A comprehensive evolutionary study of chloroplast RNA editing in gymnosperms: A novel type of G‐to‐A RNA editing is common in gymnosperms. International Journal of Molecular Science 23:10844.

2.Xie D, Du H, Xu W-H, Ran J-H*, Wang X-Q. 2022. Effects of climate change on richness distribution patterns of threatened conifers endemic to China. Ecological Indicators 136, 108594.

2021

3.Xie D, Liu X-Q, Chen Y-X, Jiao D, Lou J-X, Qiu X-F, Xu W-H, Wang Z-H, Ran J-H*, Wang X-Q. 2021. Distribution and conservation of threatened gymnosperms in China. Global Ecology and Conservation 32, e01915.

4.Kan S-L, Shen T-T, Ran J-H*, Wang X-Q*. 2021. Both Conifer II and Gnetales are characterized by a high frequency of ancient mitochondrial gene transfer to the nuclear genome. BMC Biology 19, 146.

5.Wan T, Liu Z, Leitch IJ. Xin H, Maggs-Kolling G, Gong Y, Li Z, Marais E, Liao Y, Dai C, Liu F. Wu Q, Song C, Zhou Y, Huang W, Jiang K, Wang Q, Yang Y, Zhong Z, Yang M, Yan X, Hu G, Hou C, Su Y, Feng S, Yang J, Yan J, Chu J, Chen F, Ran J-H, Wang X*, Van de Peer Y*, Leitch AR*, Wang Q*. 2021. The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts. Nature Communications 12, 4247.

6.Wu H, Yu Q, Ran J-H, Wang X-Q*. 2021. Unbiased subgenome evolution in allotetraploid species of Ephedra and its implications for the evolution of large genomes in gymnosperms. Genome Biology and Evolution 13, evaa236.

7.Feng Y-Y, Shen T-T, Shao C-C, Du H, Ran J-H*, Wang X-Q*. 2021. Phylotranscriptomics reveals the complex evolutionary and biogeographic history of the genus Tsuga with an East Asian-North American disjunct distribution. Molecular Phylogenetics and Evolution 157, 107066.

8.Fan X-K, Yan X, Feng Y-Y, Ran J-H, Qian C-J, Yin X-Y, Zhou S-S, Fang T-Z, Ma X-F. 2021. Genome size variations and species differentiation of Reaumuria soongarica. Biodiversity Science 29:1308-1320.

2020

9.Du H, Ran J-H, Feng Y-Y, Wang X-Q*. 2020. The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation. BMC Evolutionary Biology 20, 131.

10.       Kan S-L, Shen T-T, Gong P, Ran J-H*, Wang X-Q. 2020. The Complete mitochondrial genome of Taxus cuspidata (Taxaceae): Eight protein-coding genes have transferred to the nuclear genome. BMC Evolutionary Biology 20, 10.

2019

11. Shen T-T, Ran J-H*, Wang X-Q*. 2019. Phylogenomics disentangles the evolutionary history of spruces (Picea) in the Qinghai-Tibetan Plateau: implications for the design of population genetic studies and species delimitation of conifers. Molecular Phylogenetics and Evolution 141, 106612.

12. Shao C-C#, Shen T-T#, Jin W-T, Mao H-J, Ran J-H*, Wang X-Q*. 2019. Phylotranscriptomics resolves interspecific relationships and indicates multiple historical out-of-North America dispersals through the Bering Land Bridge for the genus Picea (Pinaceae). Molecular Phylogenetics and Evolution 141, 106610.

2018

13. Ran J-H#*, Shen T-T#, Wu H, Gong X, Wang X-Q*. 2018. Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis. Molecular Phylogenetics and Evolution 129, 106-116.

14. Ran J-H, Shen T-T, Wang M-M, Wang X-Q*. 2018. Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms. Proceedings of the Royal Society B: Biological Sciences 285, 20181012.

2016

15. Takuno S, Ran J-H*, Gaut BS*. 2016. Evolutionary patterns of genic DNA methylation vary across land plants. Nature Plants 2, 15222.

16. Wu H, Ma Z, Wang M-M, Qin A-L, Ran J-H, Wang X-Q*. 2016. A high frequency of allopolyploid speciation in the gymnospermous genus Ephedra and its possible association with some biological and ecological features. Molecular Ecology 25, 1192-1210.

17. Chen Z-D, Yang T, Lin L, Lu L-M, Li H-L, Sun M, Liu B, Chen M, Niu Y-T, Ye J-F, Cao Z-Y, Liu H-M, Wang X-M, Wang W, Zhang J-B, Meng Z, Cao W, Li J-H, Wu S-D, Zhao H-L, Liu Z-J, Du Z-Y, Wang Q-F, Guo J, Tan X-X, Su J-X, Zhang L-J, Yang L-L, Liao Y-Y, Li M-H, Zhang G-Q, Chung S-W, Zhang J, Xiang K-L, Li R-Q, Soltis DE, Soltis PS, Zhou S-L, Ran J-H, Wang X-Q, Jin X-H, Chen Y-S, Gao T-G, Li J-H, Zhang S-Z, Lu A-M. 2016. Tree of life for the genera of Chinese vascular plants. Journal of Systematics and Evolution 54, 277-306.

2015

18. Ran J-H#, Shen T-T#, Liu W-J, Wang P-P, Wang X-Q*. 2015. Mitochondrial introgression and complex biogeographic history of the genus Picea. Molecular Phylogenetics and Evolution 93, 63-76.

2014

19. Lu Y#, Ran J-H#, Guo D-M, Yang Z-Y, Wang X-Q*. 2014. Phylogeny and divergence times of gymnosperms inferred from single-copy nuclear genes. PLoS One 9, e107679.

20. Wang X-Q*, Ran J-H. 2014. Evolution and biogeography of gymnosperms. Molecular Phylogenetics and Evolution 75, 24-40.

2013

21. Ran J-H*, Shen T-T, Liu W-J, Wang X-Q*. 2013. Evolution of the bHLH genes involved in stomatal development: Implications for the expansion of developmental complexity of stomata in land plants. PLoS One 8, E78997.

22. Qin A-L, Wang M-M, Cun Y-Z, Yang F-S, Wang S-S, Ran J-H, Wang, X-Q*. 2013. Phylogeographic evidence for a link of species divergence of Ephedra in the Qinghai-Tibetan Plateau and adjacent regions to the Miocene Asian aridification. PLoS One 8, e56243.

2012

23. Yang Z-Y, Ran J-H, Wang X-Q*. 2012. Three genome-based phylogeny of Cupressaceae s.l.: Further evidence for the evolution of gymnosperms and the Southern Hemisphere biogeography. Molecular Phylogenetics and Evolution 64, 452-470.

24. Gao H, Guo D-M, Liu W-J, Ran J-H*, Wang X-Q. 2012. Evolution of the 4-coumarate:coenzyme A ligase (4CL) gene family: Conserved evolutionary pattern and two new gene classes in gymnosperms. Journal of Systematics and Evolution 50, 195-205.

2010及以前

25. Guo D-M#, Ran J-H#, Wang X-Q*. 2010. Evolution of the cinnamyl/sinapyl alcohol dehydrogenase (CAD/SAD) gene family: the emergence of real lignin is associated with the origin of bona fide CAD. Journal of Molecular Evolution 71, 202-218.

26. Ran J-H, Gao H, Wang X-Q*. 2010. Fast evolution of the retroprocessed mitochondrial rps3 gene in Conifer II and further evidence for the phylogeny of gymnosperms. Molecular Phylogenetics and Evolution 54, 136-149.

27. Ran J-H, Wang P-P, Zhao H-J, Wang X-Q*. 2010. A test of seven candidate barcode regions from the plastome in Picea (Pinaceae). Journal of Integrative Plant Biology 52, 1109-1126.

28. Qiao C-Y#, Ran J-H#, Li Y, Wang X-Q*. 2007. Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions. Annals of Botany 100, 573-580.

29. Ran J-H, Wei X-X, Wang X-Q*. 2006. Molecular phylogeny and biogeography of Picea (Pinaceae): implications for phylogeographical studies using cytoplasmic haplotypes. Molecular Phylogenetics and Evolution 41, 405-419.